Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 AC106886.4-201ENST00000623557 2502 ntBASIC17.37■□□□□ 0.37
HLA-DQB2P05538 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DQB2P05538 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 PAWRP1-201ENST00000451083 565 ntBASIC17.36■□□□□ 0.37
HLA-DQB2P05538 RNA5SP419-201ENST00000515908 135 ntBASIC17.36■□□□□ 0.37
HLA-DQB2P05538 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DQB2P05538 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 AL031284.1-201ENST00000419297 478 ntBASIC17.35■□□□□ 0.37
HLA-DQB2P05538 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 RPS15P9-201ENST00000494093 319 ntBASIC17.35■□□□□ 0.37
HLA-DQB2P05538 AC136632.2-201ENST00000512891 861 ntBASIC17.35■□□□□ 0.37
HLA-DQB2P05538 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 AC105339.3-201ENST00000560043 636 ntBASIC17.35■□□□□ 0.37
HLA-DQB2P05538 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQB2P05538 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 AL356488.2-201ENST00000602755 427 ntBASIC17.34■□□□□ 0.37
HLA-DQB2P05538 PI4KAP1-204ENST00000612579 1703 ntBASIC17.34■□□□□ 0.37
HLA-DQB2P05538 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.34■□□□□ 0.37
HLA-DQB2P05538 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms