Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC20.43■□□□□ 0.86
COL1A1P02452 SPCS2P4-201ENST00000436160 681 ntBASIC20.43■□□□□ 0.86
COL1A1P02452 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC20.43■□□□□ 0.86
COL1A1P02452 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.43■□□□□ 0.86
COL1A1P02452 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.43■□□□□ 0.86
COL1A1P02452 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC20.43■□□□□ 0.86
COL1A1P02452 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 KRT8P49-201ENST00000604166 1432 ntBASIC20.43■□□□□ 0.86
COL1A1P02452 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL1A1P02452 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.43■□□□□ 0.86
COL1A1P02452 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL1A1P02452 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC20.43■□□□□ 0.86
COL1A1P02452 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC20.43■□□□□ 0.86
COL1A1P02452 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 AC093214.1-201ENST00000511688 1107 ntBASIC20.43■□□□□ 0.86
COL1A1P02452 AC190387.1-201ENST00000551683 408 ntBASIC20.43■□□□□ 0.86
COL1A1P02452 MIR4492-201ENST00000581627 80 ntBASIC20.43■□□□□ 0.86
COL1A1P02452 MPDU1-223ENST00000582151 728 ntBASIC20.43■□□□□ 0.86
COL1A1P02452 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL1A1P02452 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC20.43■□□□□ 0.86
COL1A1P02452 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC20.43■□□□□ 0.86
COL1A1P02452 AP001059.3-201ENST00000619053 235 ntBASIC20.43■□□□□ 0.86
COL1A1P02452 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL1A1P02452 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.43■□□□□ 0.86
COL1A1P02452 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
COL1A1P02452 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
COL1A1P02452 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
COL1A1P02452 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
COL1A1P02452 AC131009.4-201ENST00000624048 1740 ntBASIC20.42■□□□□ 0.86
COL1A1P02452 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL1A1P02452 AL671277.1-201ENST00000429656 993 ntBASIC20.42■□□□□ 0.86
COL1A1P02452 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 AC069262.1-201ENST00000539058 672 ntBASIC20.42■□□□□ 0.86
COL1A1P02452 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 AL512356.2-201ENST00000546955 174 ntBASIC20.42■□□□□ 0.86
COL1A1P02452 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.42■□□□□ 0.86
COL1A1P02452 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL1A1P02452 MIR3909-201ENST00000579518 119 ntBASIC20.42■□□□□ 0.86
COL1A1P02452 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC20.42■□□□□ 0.86
COL1A1P02452 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.42■□□□□ 0.86
COL1A1P02452 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL1A1P02452 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.41■□□□□ 0.86
COL1A1P02452 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.41■□□□□ 0.86
COL1A1P02452 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL1A1P02452 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC20.41■□□□□ 0.86
COL1A1P02452 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
COL1A1P02452 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
COL1A1P02452 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
COL1A1P02452 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL1A1P02452 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC20.41■□□□□ 0.86
COL1A1P02452 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 AC087641.1-201ENST00000557561 1021 ntBASIC20.41■□□□□ 0.86
COL1A1P02452 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC20.41■□□□□ 0.86
COL1A1P02452 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC20.41■□□□□ 0.86
COL1A1P02452 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.41■□□□□ 0.86
COL1A1P02452 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.41■□□□□ 0.86
COL1A1P02452 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC20.41■□□□□ 0.86
COL1A1P02452 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL1A1P02452 AC141586.5-201ENST00000624546 2050 ntBASIC20.41■□□□□ 0.86
COL1A1P02452 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC20.41■□□□□ 0.86
COL1A1P02452 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.4■□□□□ 0.86
COL1A1P02452 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms