Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.72■□□□□ 0.59
CLDN3O15551 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.72■□□□□ 0.59
CLDN3O15551 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.72■□□□□ 0.59
CLDN3O15551 AC004790.2-201ENST00000623588 572 ntBASIC18.72■□□□□ 0.59
CLDN3O15551 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.72■□□□□ 0.59
CLDN3O15551 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CLDN3O15551 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.72■□□□□ 0.59
CLDN3O15551 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CLDN3O15551 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.71■□□□□ 0.59
CLDN3O15551 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
CLDN3O15551 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CLDN3O15551 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CLDN3O15551 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.71■□□□□ 0.59
CLDN3O15551 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CLDN3O15551 PAWRP1-201ENST00000451083 565 ntBASIC18.71■□□□□ 0.59
CLDN3O15551 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CLDN3O15551 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.71■□□□□ 0.59
CLDN3O15551 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.71■□□□□ 0.59
CLDN3O15551 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.71■□□□□ 0.59
CLDN3O15551 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.71■□□□□ 0.59
CLDN3O15551 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
CLDN3O15551 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN3O15551 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
CLDN3O15551 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 AC009053.2-201ENST00000563701 2365 ntBASIC18.7■□□□□ 0.58
CLDN3O15551 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.7■□□□□ 0.58
CLDN3O15551 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
CLDN3O15551 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.7■□□□□ 0.58
CLDN3O15551 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.7■□□□□ 0.58
CLDN3O15551 MRPL20P1-201ENST00000400819 433 ntBASIC18.7■□□□□ 0.58
CLDN3O15551 PMS2P1-201ENST00000431037 1228 ntBASIC18.7■□□□□ 0.58
CLDN3O15551 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.7■□□□□ 0.58
CLDN3O15551 PRSS29P-201ENST00000440800 595 ntBASIC18.7■□□□□ 0.58
CLDN3O15551 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.7■□□□□ 0.58
CLDN3O15551 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN3O15551 PRORSD1P-202ENST00000563365 2154 ntBASIC18.7■□□□□ 0.58
CLDN3O15551 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN3O15551 MIR4751-201ENST00000578027 74 ntBASIC18.7■□□□□ 0.58
CLDN3O15551 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.7■□□□□ 0.58
CLDN3O15551 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.7■□□□□ 0.58
CLDN3O15551 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.7■□□□□ 0.58
CLDN3O15551 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLDN3O15551 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN3O15551 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CLDN3O15551 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLDN3O15551 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.69■□□□□ 0.58
CLDN3O15551 CRYGEP-201ENST00000412192 528 ntBASIC18.69■□□□□ 0.58
CLDN3O15551 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.69■□□□□ 0.58
CLDN3O15551 KRT18P58-201ENST00000527480 1120 ntBASIC18.69■□□□□ 0.58
CLDN3O15551 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.69■□□□□ 0.58
CLDN3O15551 AC027601.4-201ENST00000611259 610 ntBASIC18.69■□□□□ 0.58
CLDN3O15551 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.69■□□□□ 0.58
CLDN3O15551 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN3O15551 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms