Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
UBFD1O14562 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.63■□□□□ 0.25
UBFD1O14562 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
UBFD1O14562 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.63■□□□□ 0.25
UBFD1O14562 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 MINOS1P3-201ENST00000457048 203 ntBASIC16.63■□□□□ 0.25
UBFD1O14562 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.63■□□□□ 0.25
UBFD1O14562 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.63■□□□□ 0.25
UBFD1O14562 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.63■□□□□ 0.25
UBFD1O14562 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.63■□□□□ 0.25
UBFD1O14562 Z69720.1-201ENST00000601483 472 ntBASIC16.63■□□□□ 0.25
UBFD1O14562 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.63■□□□□ 0.25
UBFD1O14562 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
UBFD1O14562 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.63■□□□□ 0.25
UBFD1O14562 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.63■□□□□ 0.25
UBFD1O14562 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
UBFD1O14562 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.62■□□□□ 0.25
UBFD1O14562 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
UBFD1O14562 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 AC026691.1-201ENST00000602502 2017 ntBASIC16.62■□□□□ 0.25
UBFD1O14562 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.62■□□□□ 0.25
UBFD1O14562 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
UBFD1O14562 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.62■□□□□ 0.25
UBFD1O14562 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
UBFD1O14562 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
UBFD1O14562 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.62■□□□□ 0.25
UBFD1O14562 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
UBFD1O14562 SPDYE21P-201ENST00000413323 827 ntBASIC16.62■□□□□ 0.25
UBFD1O14562 PCED1CP-201ENST00000419887 785 ntBASIC16.62■□□□□ 0.25
UBFD1O14562 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
UBFD1O14562 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.62■□□□□ 0.25
UBFD1O14562 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.62■□□□□ 0.25
UBFD1O14562 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.62■□□□□ 0.25
UBFD1O14562 AL391005.1-201ENST00000623953 2435 ntBASIC16.62■□□□□ 0.25
UBFD1O14562 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
UBFD1O14562 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.62■□□□□ 0.25
UBFD1O14562 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
UBFD1O14562 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 CICP6-201ENST00000457191 2729 ntBASIC16.61■□□□□ 0.25
UBFD1O14562 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
UBFD1O14562 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
UBFD1O14562 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
UBFD1O14562 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.61■□□□□ 0.25
UBFD1O14562 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.61■□□□□ 0.25
UBFD1O14562 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms