Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CROCCP2-202ENST00000412962 2773 ntBASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTCHD1Q96NR3 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 GPR89P-201ENST00000407924 1495 ntBASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 RPL13AP23-201ENST00000480739 586 ntBASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 IGHV3-22-201ENST00000520721 359 ntBASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 AC117500.6-201ENST00000624871 588 ntBASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD1Q96NR3 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 AL022342.1-201ENST00000400363 863 ntBASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 RNA5SP415-201ENST00000517246 115 ntBASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 AL590787.1-201ENST00000568856 1315 ntBASIC16.18■□□□□ 0.18
PTCHD1Q96NR3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 AL023806.1-201ENST00000603994 1649 ntBASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms