Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 AL355877.3-201ENST00000622820 899 ntBASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 AC092068.3-201ENST00000587894 2016 ntBASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 LINC00982-205ENST00000420957 435 ntBASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 ACTG1P4-201ENST00000425123 1122 ntBASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 AC008608.2-201ENST00000606089 416 ntBASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 REXO1L6P-202ENST00000619970 1078 ntBASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC116Q8IYX3 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 GPR89P-201ENST00000407924 1495 ntBASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 AC064862.7-201ENST00000604520 867 ntBASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 IFNL4P1-201ENST00000607083 540 ntBASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 AL139288.1-201ENST00000623748 933 ntBASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 AL022326.1-202ENST00000641533 845 ntBASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC116Q8IYX3 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CCDC116Q8IYX3 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms