Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC11.79□□□□□ -0.52
CSMD3Q7Z407 BCYRN1-201ENST00000418539 200 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 KRT17P7-201ENST00000451704 1104 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 PARP8-218ENST00000513738 596 ntTSL 4 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AC027307.2-201ENST00000591252 911 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AC008494.3-201ENST00000606615 944 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 RNA5-8SN1-201ENST00000610460 153 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 RNA5-8SN5-202ENST00000612463 153 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 RNA5-8SN4-201ENST00000613359 153 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 RNA5-8SN5-201ENST00000619471 153 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 WNT11-204ENST00000621122 789 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AL590560.3-201ENST00000623350 461 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 HLA-DQB1-201ENST00000374943 1656 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AL391825.1-201ENST00000457671 1364 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AL353779.1-201ENST00000434793 351 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AC004408.2-201ENST00000623613 2777 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 AC012569.1-201ENST00000591191 1524 ntBASIC11.78□□□□□ -0.52
CSMD3Q7Z407 CD276-201ENST00000318424 2738 ntTSL 5 BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CSMD3Q7Z407 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 AC142381.1-201ENST00000426099 345 ntBASIC11.77□□□□□ -0.52
CSMD3Q7Z407 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 HARS-204ENST00000438307 1789 ntTSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC11.77□□□□□ -0.52
CSMD3Q7Z407 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 MIR4259-201ENST00000584466 101 ntBASIC11.77□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms