Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
CTR9Q6PD62 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 PRORSD1P-202ENST00000563365 2154 ntBASIC20.32■□□□□ 0.84
CTR9Q6PD62 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 AC004832.2-201ENST00000426397 482 ntBASIC20.32■□□□□ 0.84
CTR9Q6PD62 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 AC006538.3-201ENST00000612495 578 ntBASIC20.32■□□□□ 0.84
CTR9Q6PD62 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.32■□□□□ 0.84
CTR9Q6PD62 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTR9Q6PD62 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 FAM185BP-201ENST00000443595 716 ntBASIC20.31■□□□□ 0.84
CTR9Q6PD62 CXCL1P1-201ENST00000502804 216 ntBASIC20.31■□□□□ 0.84
CTR9Q6PD62 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTR9Q6PD62 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CTR9Q6PD62 HTR7P1-202ENST00000624664 4411 ntBASIC20.3■□□□□ 0.84
CTR9Q6PD62 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 AC141586.5-201ENST00000624546 2050 ntBASIC20.3■□□□□ 0.84
CTR9Q6PD62 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 AC002347.1-201ENST00000569543 541 ntBASIC20.3■□□□□ 0.84
CTR9Q6PD62 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 ACTL9-202ENST00000612068 1252 ntBASIC20.3■□□□□ 0.84
CTR9Q6PD62 AC004877.2-201ENST00000623941 599 ntBASIC20.3■□□□□ 0.84
CTR9Q6PD62 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.3■□□□□ 0.84
CTR9Q6PD62 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.3■□□□□ 0.84
CTR9Q6PD62 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms