Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CX3CL1P78423 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CX3CL1P78423 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CX3CL1P78423 CROCCP2-202ENST00000412962 2773 ntBASIC13.88□□□□□ -0.19
CX3CL1P78423 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.87□□□□□ -0.19
CX3CL1P78423 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC13.87□□□□□ -0.19
CX3CL1P78423 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 SRP19-202ENST00000445150 833 ntTSL 2 BASIC13.87□□□□□ -0.19
CX3CL1P78423 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC13.87□□□□□ -0.19
CX3CL1P78423 KRT18P56-201ENST00000507275 550 ntBASIC13.87□□□□□ -0.19
CX3CL1P78423 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC13.87□□□□□ -0.19
CX3CL1P78423 COX5A-202ENST00000562233 441 ntTSL 3 BASIC13.87□□□□□ -0.19
CX3CL1P78423 STK25P1-201ENST00000585406 838 ntBASIC13.87□□□□□ -0.19
CX3CL1P78423 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC13.87□□□□□ -0.19
CX3CL1P78423 GZMM-202ENST00000592501 941 ntTSL 3 BASIC13.87□□□□□ -0.19
CX3CL1P78423 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC13.87□□□□□ -0.19
CX3CL1P78423 AC073592.5-201ENST00000624854 528 ntBASIC13.87□□□□□ -0.19
CX3CL1P78423 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC13.87□□□□□ -0.19
CX3CL1P78423 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC13.87□□□□□ -0.19
CX3CL1P78423 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CX3CL1P78423 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.87□□□□□ -0.19
CX3CL1P78423 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
CX3CL1P78423 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CX3CL1P78423 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.87□□□□□ -0.19
CX3CL1P78423 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CX3CL1P78423 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 CICP6-201ENST00000457191 2729 ntBASIC13.86□□□□□ -0.19
CX3CL1P78423 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
CX3CL1P78423 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CX3CL1P78423 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CX3CL1P78423 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.86□□□□□ -0.19
CX3CL1P78423 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
CX3CL1P78423 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC13.86□□□□□ -0.19
CX3CL1P78423 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CX3CL1P78423 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.86□□□□□ -0.19
CX3CL1P78423 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 AC003669.1-201ENST00000334569 611 ntBASIC13.86□□□□□ -0.19
CX3CL1P78423 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CX3CL1P78423 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CX3CL1P78423 ABCD1P5-201ENST00000445663 754 ntBASIC13.86□□□□□ -0.19
CX3CL1P78423 TK1-204ENST00000590430 683 ntTSL 3 BASIC13.86□□□□□ -0.19
CX3CL1P78423 IGHV3OR16-7-201ENST00000604106 360 ntBASIC13.86□□□□□ -0.19
CX3CL1P78423 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.86□□□□□ -0.19
CX3CL1P78423 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms