Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC12.18□□□□□ -0.46
RPL39P62891 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
RPL39P62891 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
RPL39P62891 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
RPL39P62891 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
RPL39P62891 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC12.18□□□□□ -0.46
RPL39P62891 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 AC009154.2-201ENST00000621177 724 ntBASIC12.18□□□□□ -0.46
RPL39P62891 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC12.18□□□□□ -0.46
RPL39P62891 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
RPL39P62891 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
RPL39P62891 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC12.18□□□□□ -0.46
RPL39P62891 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
RPL39P62891 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
RPL39P62891 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC12.18□□□□□ -0.46
RPL39P62891 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
RPL39P62891 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
RPL39P62891 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
RPL39P62891 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 AC022188.1-201ENST00000620960 1664 ntBASIC12.17□□□□□ -0.46
RPL39P62891 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 INGX-201ENST00000359239 846 ntBASIC12.17□□□□□ -0.46
RPL39P62891 TSPY12P-201ENST00000421279 868 ntBASIC12.17□□□□□ -0.46
RPL39P62891 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC12.17□□□□□ -0.46
RPL39P62891 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 FITM1-202ENST00000559294 800 ntBASIC12.17□□□□□ -0.46
RPL39P62891 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC12.17□□□□□ -0.46
RPL39P62891 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.17□□□□□ -0.46
RPL39P62891 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
RPL39P62891 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC12.17□□□□□ -0.46
RPL39P62891 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC12.17□□□□□ -0.46
RPL39P62891 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RPL39P62891 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
RPL39P62891 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC12.16□□□□□ -0.46
RPL39P62891 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.16□□□□□ -0.46
RPL39P62891 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC12.16□□□□□ -0.46
RPL39P62891 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.16□□□□□ -0.46
RPL39P62891 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC12.16□□□□□ -0.46
RPL39P62891 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 MIR1238-201ENST00000408483 83 ntBASIC12.16□□□□□ -0.46
RPL39P62891 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC12.16□□□□□ -0.46
RPL39P62891 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC12.16□□□□□ -0.46
RPL39P62891 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RPL39P62891 AC002558.1-201ENST00000488906 803 ntBASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms