Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 GPX1P2-201ENST00000429271 606 ntBASIC15.74■□□□□ 0.11
RFC3P40938 VN2R19P-201ENST00000442399 1052 ntBASIC15.74■□□□□ 0.11
RFC3P40938 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.74■□□□□ 0.11
RFC3P40938 AC112482.1-201ENST00000492080 688 ntBASIC15.74■□□□□ 0.11
RFC3P40938 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.74■□□□□ 0.11
RFC3P40938 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.74■□□□□ 0.11
RFC3P40938 AC002347.1-201ENST00000569543 541 ntBASIC15.74■□□□□ 0.11
RFC3P40938 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.74■□□□□ 0.11
RFC3P40938 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.74■□□□□ 0.11
RFC3P40938 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.74■□□□□ 0.11
RFC3P40938 AL805961.1-202ENST00000641562 540 ntBASIC15.74■□□□□ 0.11
RFC3P40938 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
RFC3P40938 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
RFC3P40938 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.74■□□□□ 0.11
RFC3P40938 PI4KAP1-204ENST00000612579 1703 ntBASIC15.74■□□□□ 0.11
RFC3P40938 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFC3P40938 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
RFC3P40938 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.73■□□□□ 0.11
RFC3P40938 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.73■□□□□ 0.11
RFC3P40938 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.73■□□□□ 0.11
RFC3P40938 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.73■□□□□ 0.11
RFC3P40938 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.73■□□□□ 0.11
RFC3P40938 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
RFC3P40938 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.73■□□□□ 0.11
RFC3P40938 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.73■□□□□ 0.11
RFC3P40938 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.73■□□□□ 0.11
RFC3P40938 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.73■□□□□ 0.11
RFC3P40938 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.73■□□□□ 0.11
RFC3P40938 MIR3687-2-201ENST00000577708 61 ntBASIC15.73■□□□□ 0.11
RFC3P40938 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.73■□□□□ 0.11
RFC3P40938 MIR3687-1-201ENST00000614492 61 ntBASIC15.73■□□□□ 0.11
RFC3P40938 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.73■□□□□ 0.11
RFC3P40938 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
RFC3P40938 AC092865.6-201ENST00000642101 219 ntBASIC15.73■□□□□ 0.11
RFC3P40938 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
RFC3P40938 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
RFC3P40938 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.73■□□□□ 0.11
RFC3P40938 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.73■□□□□ 0.11
RFC3P40938 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFC3P40938 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.72■□□□□ 0.11
RFC3P40938 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 GPR89P-201ENST00000407924 1495 ntBASIC15.72■□□□□ 0.11
RFC3P40938 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.72■□□□□ 0.11
RFC3P40938 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.72■□□□□ 0.11
RFC3P40938 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.72■□□□□ 0.11
RFC3P40938 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.72■□□□□ 0.11
RFC3P40938 AC006116.8-202ENST00000587620 1550 ntBASIC15.72■□□□□ 0.11
RFC3P40938 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.72■□□□□ 0.11
RFC3P40938 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.72■□□□□ 0.11
RFC3P40938 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.72■□□□□ 0.11
RFC3P40938 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.72■□□□□ 0.11
RFC3P40938 AL513190.1-201ENST00000621254 727 ntBASIC15.72■□□□□ 0.11
RFC3P40938 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RFC3P40938 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms