Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
COL5A1P20908 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.28■□□□□ 0.2
COL5A1P20908 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.27■□□□□ 0.2
COL5A1P20908 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
COL5A1P20908 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.27■□□□□ 0.2
COL5A1P20908 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 OR8S1-201ENST00000310194 1080 ntBASIC16.27■□□□□ 0.2
COL5A1P20908 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL5A1P20908 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL5A1P20908 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL5A1P20908 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
COL5A1P20908 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.27■□□□□ 0.2
COL5A1P20908 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.27■□□□□ 0.2
COL5A1P20908 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.27■□□□□ 0.2
COL5A1P20908 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
COL5A1P20908 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.27■□□□□ 0.2
COL5A1P20908 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.27■□□□□ 0.2
COL5A1P20908 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.27■□□□□ 0.2
COL5A1P20908 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
COL5A1P20908 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL5A1P20908 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
COL5A1P20908 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
COL5A1P20908 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL5A1P20908 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
COL5A1P20908 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL5A1P20908 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL5A1P20908 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL5A1P20908 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL5A1P20908 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.27■□□□□ 0.19
COL5A1P20908 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 AC142381.1-201ENST00000426099 345 ntBASIC16.26■□□□□ 0.19
COL5A1P20908 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.26■□□□□ 0.19
COL5A1P20908 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.26■□□□□ 0.19
COL5A1P20908 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.26■□□□□ 0.19
COL5A1P20908 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.26■□□□□ 0.19
COL5A1P20908 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.26■□□□□ 0.19
COL5A1P20908 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 MIR4453-201ENST00000584019 89 ntBASIC16.26■□□□□ 0.19
COL5A1P20908 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
COL5A1P20908 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.26■□□□□ 0.19
COL5A1P20908 AC016027.1-202ENST00000607927 1699 ntBASIC16.26■□□□□ 0.19
COL5A1P20908 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.26■□□□□ 0.19
COL5A1P20908 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.26■□□□□ 0.19
COL5A1P20908 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.26■□□□□ 0.19
COL5A1P20908 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.26■□□□□ 0.19
COL5A1P20908 CR383656.12-201ENST00000549567 513 ntBASIC16.26■□□□□ 0.19
COL5A1P20908 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.26■□□□□ 0.19
COL5A1P20908 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
COL5A1P20908 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.26■□□□□ 0.19
COL5A1P20908 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.26■□□□□ 0.19
COL5A1P20908 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
COL5A1P20908 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL5A1P20908 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
COL5A1P20908 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.25■□□□□ 0.19
COL5A1P20908 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 EGFEM1P-202ENST00000431685 1563 ntBASIC16.25■□□□□ 0.19
COL5A1P20908 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.25■□□□□ 0.19
COL5A1P20908 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
COL5A1P20908 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
COL5A1P20908 AC131009.4-201ENST00000624048 1740 ntBASIC16.25■□□□□ 0.19
COL5A1P20908 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms