Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 EGFEM1P-202ENST00000431685 1563 ntBASIC16.71■□□□□ 0.27
TNFP01375 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TNFP01375 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.7■□□□□ 0.26
TNFP01375 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 AC093525.9-201ENST00000624961 1746 ntBASIC16.7■□□□□ 0.26
TNFP01375 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.7■□□□□ 0.26
TNFP01375 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
TNFP01375 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.7■□□□□ 0.26
TNFP01375 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.7■□□□□ 0.26
TNFP01375 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.7■□□□□ 0.26
TNFP01375 AP002472.1-201ENST00000577490 586 ntBASIC16.7■□□□□ 0.26
TNFP01375 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.7■□□□□ 0.26
TNFP01375 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.7■□□□□ 0.26
TNFP01375 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.7■□□□□ 0.26
TNFP01375 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.7■□□□□ 0.26
TNFP01375 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TNFP01375 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
TNFP01375 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 AC002056.1-201ENST00000395613 760 ntBASIC16.69■□□□□ 0.26
TNFP01375 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.69■□□□□ 0.26
TNFP01375 PMS2P2-201ENST00000425039 1128 ntBASIC16.69■□□□□ 0.26
TNFP01375 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.69■□□□□ 0.26
TNFP01375 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.69■□□□□ 0.26
TNFP01375 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.69■□□□□ 0.26
TNFP01375 AC005412.3-201ENST00000580309 715 ntBASIC16.69■□□□□ 0.26
TNFP01375 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.69■□□□□ 0.26
TNFP01375 MIR4515-201ENST00000584082 81 ntBASIC16.69■□□□□ 0.26
TNFP01375 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.69■□□□□ 0.26
TNFP01375 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TNFP01375 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.69■□□□□ 0.26
TNFP01375 REXO1L3P-201ENST00000622202 1288 ntBASIC16.69■□□□□ 0.26
TNFP01375 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
TNFP01375 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.69■□□□□ 0.26
TNFP01375 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
TNFP01375 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TNFP01375 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.68■□□□□ 0.26
TNFP01375 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.68■□□□□ 0.26
TNFP01375 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TNFP01375 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TNFP01375 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TNFP01375 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.68■□□□□ 0.26
TNFP01375 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.68■□□□□ 0.26
TNFP01375 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TNFP01375 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms