Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.75■□□□□ 0.59
CLDN3O15551 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.75■□□□□ 0.59
CLDN3O15551 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.75■□□□□ 0.59
CLDN3O15551 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.75■□□□□ 0.59
CLDN3O15551 TERC-201ENST00000602385 541 ntBASIC18.75■□□□□ 0.59
CLDN3O15551 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.75■□□□□ 0.59
CLDN3O15551 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.75■□□□□ 0.59
CLDN3O15551 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLDN3O15551 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.75■□□□□ 0.59
CLDN3O15551 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CLDN3O15551 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CLDN3O15551 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.74■□□□□ 0.59
CLDN3O15551 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.74■□□□□ 0.59
CLDN3O15551 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CLDN3O15551 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 EGFEM1P-202ENST00000431685 1563 ntBASIC18.74■□□□□ 0.59
CLDN3O15551 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CLDN3O15551 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.74■□□□□ 0.59
CLDN3O15551 SLC25A1P3-201ENST00000395415 828 ntBASIC18.74■□□□□ 0.59
CLDN3O15551 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.74■□□□□ 0.59
CLDN3O15551 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 AC108073.2-201ENST00000464002 357 ntBASIC18.74■□□□□ 0.59
CLDN3O15551 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CLDN3O15551 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.74■□□□□ 0.59
CLDN3O15551 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CLDN3O15551 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CLDN3O15551 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.74■□□□□ 0.59
CLDN3O15551 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLDN3O15551 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CLDN3O15551 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.73■□□□□ 0.59
CLDN3O15551 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.73■□□□□ 0.59
CLDN3O15551 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CLDN3O15551 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.73■□□□□ 0.59
CLDN3O15551 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 PCDHA12-202ENST00000613593 2588 ntBASIC18.73■□□□□ 0.59
CLDN3O15551 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CLDN3O15551 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
CLDN3O15551 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.73■□□□□ 0.59
CLDN3O15551 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.73■□□□□ 0.59
CLDN3O15551 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.73■□□□□ 0.59
CLDN3O15551 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CLDN3O15551 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CLDN3O15551 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.73■□□□□ 0.59
CLDN3O15551 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLDN3O15551 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CLDN3O15551 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CLDN3O15551 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.72■□□□□ 0.59
CLDN3O15551 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.72■□□□□ 0.59
CLDN3O15551 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CLDN3O15551 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 AL023806.1-201ENST00000603994 1649 ntBASIC18.72■□□□□ 0.59
CLDN3O15551 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 MIR574-201ENST00000385209 96 ntBASIC18.72■□□□□ 0.59
CLDN3O15551 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CLDN3O15551 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLDN3O15551 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms