Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 LYSMD4-203ENST00000378904 2122 ntBASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 AC135050.7-201ENST00000624508 2218 ntBASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 SLC25A6P5-201ENST00000435663 894 ntBASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CTDP1Q9Y5B0 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 CNN2P11-201ENST00000429351 262 ntBASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 AC006116.8-202ENST00000587620 1550 ntBASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDP1Q9Y5B0 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 AC129492.6-201ENST00000611383 1305 ntBASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 FAM185BP-201ENST00000443595 716 ntBASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 AC068137.2-201ENST00000605408 478 ntBASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDP1Q9Y5B0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDP1Q9Y5B0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CTDP1Q9Y5B0 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.79■□□□□ 0.76
CTDP1Q9Y5B0 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.79■□□□□ 0.76
CTDP1Q9Y5B0 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.79■□□□□ 0.76
CTDP1Q9Y5B0 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTDP1Q9Y5B0 KRT18P28-201ENST00000453838 1332 ntBASIC19.79■□□□□ 0.76
CTDP1Q9Y5B0 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms