Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 AC097637.2-201ENST00000624096 1997 ntBASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
VPS9D1Q9Y2B5 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS9D1Q9Y2B5 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 ARL4AP4-201ENST00000434170 518 ntBASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 PRELID1P1-202ENST00000567272 903 ntBASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 AP001269.4-201ENST00000609611 512 ntBASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 AL022326.1-202ENST00000641533 845 ntBASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS9D1Q9Y2B5 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms