Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 AC074386.1-202ENST00000463561 864 ntBASIC17.78■□□□□ 0.44
HPS4Q9NQG7 RFPL4AP1-201ENST00000530883 850 ntBASIC17.78■□□□□ 0.44
HPS4Q9NQG7 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 REXO1L11P-201ENST00000620964 1927 ntBASIC17.78■□□□□ 0.44
HPS4Q9NQG7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HPS4Q9NQG7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 CXCL1P1-201ENST00000502804 216 ntBASIC17.77■□□□□ 0.44
HPS4Q9NQG7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 AC023141.13-201ENST00000604991 943 ntBASIC17.77■□□□□ 0.44
HPS4Q9NQG7 AC027612.4-201ENST00000605371 583 ntBASIC17.77■□□□□ 0.44
HPS4Q9NQG7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HPS4Q9NQG7 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.77■□□□□ 0.43
HPS4Q9NQG7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HPS4Q9NQG7 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.77■□□□□ 0.43
HPS4Q9NQG7 AL135999.2-201ENST00000622438 1686 ntBASIC17.77■□□□□ 0.43
HPS4Q9NQG7 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.77■□□□□ 0.43
HPS4Q9NQG7 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
HPS4Q9NQG7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.77■□□□□ 0.43
HPS4Q9NQG7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
HPS4Q9NQG7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
HPS4Q9NQG7 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 CYMP-203ENST00000474680 1263 ntBASIC17.76■□□□□ 0.43
HPS4Q9NQG7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 AC007064.4-201ENST00000637740 555 ntBASIC17.76■□□□□ 0.43
HPS4Q9NQG7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS4Q9NQG7 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms