Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 CHCHD2P8-201ENST00000429873 447 ntBASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 BX276092.5-203ENST00000456199 560 ntBASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 AC009533.2-201ENST00000543664 586 ntBASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 DOC2GP-204ENST00000639052 2548 ntBASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ATG4AQ8WYN0 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.83■□□□□ 0.45
ATG4AQ8WYN0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
ATG4AQ8WYN0 AC008741.2-201ENST00000612792 3115 ntBASIC17.83■□□□□ 0.45
ATG4AQ8WYN0 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
ATG4AQ8WYN0 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
ATG4AQ8WYN0 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ATG4AQ8WYN0 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
ATG4AQ8WYN0 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
ATG4AQ8WYN0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 KLF4P1-201ENST00000412782 1185 ntBASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 AL121672.3-201ENST00000608644 468 ntBASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ATG4AQ8WYN0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 TP73-AS1-210ENST00000637775 1455 ntBASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 FAM86EP-206ENST00000510506 987 ntBASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 KRT18P21-201ENST00000515767 1272 ntBASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 AD001527.2-201ENST00000622994 785 ntBASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 AC073592.5-201ENST00000624854 528 ntBASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 AL121956.5-201ENST00000625261 221 ntBASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 PCDHB17P-201ENST00000539533 2393 ntBASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ATG4AQ8WYN0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms