Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 FAM185BP-201ENST00000443595 716 ntBASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 AC087163.2-201ENST00000457299 853 ntBASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 SLC25A6P2-201ENST00000497974 877 ntBASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDDC3Q8N4P3 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HDDC3Q8N4P3 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
HDDC3Q8N4P3 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HDDC3Q8N4P3 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 FAM58CP-201ENST00000435741 640 ntBASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AL513480.1-201ENST00000451731 511 ntBASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AL031432.2-201ENST00000566714 459 ntBASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AL928711.1-201ENST00000570165 459 ntBASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AC027612.4-201ENST00000605371 583 ntBASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDDC3Q8N4P3 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms