Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
NPHP3Q7Z494 AC087289.5-201ENST00000586076 3175 ntBASIC23.03■■□□□ 1.28
NPHP3Q7Z494 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 TOP3BP1-201ENST00000420768 1380 ntBASIC23.03■■□□□ 1.28
NPHP3Q7Z494 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 AC079776.1-201ENST00000401540 1152 ntBASIC23.03■■□□□ 1.28
NPHP3Q7Z494 PGF-202ENST00000405431 666 ntTSL 5 BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 INE1-201ENST00000456273 945 ntBASIC23.03■■□□□ 1.28
NPHP3Q7Z494 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 AL162274.1-201ENST00000617191 1098 ntBASIC23.03■■□□□ 1.28
NPHP3Q7Z494 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC23.03■■□□□ 1.28
NPHP3Q7Z494 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 RPS2P32-201ENST00000439199 892 ntBASIC23.02■■□□□ 1.28
NPHP3Q7Z494 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP3Q7Z494 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 MIR1909-201ENST00000411312 80 ntBASIC23.01■■□□□ 1.27
NPHP3Q7Z494 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 POLE2-203ENST00000553805 496 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 RNA5-8SN1-201ENST00000610460 153 ntBASIC23.01■■□□□ 1.27
NPHP3Q7Z494 RNA5-8SN5-202ENST00000612463 153 ntBASIC23.01■■□□□ 1.27
NPHP3Q7Z494 RNA5-8SN4-201ENST00000613359 153 ntBASIC23.01■■□□□ 1.27
NPHP3Q7Z494 RNA5-8SN5-201ENST00000619471 153 ntBASIC23.01■■□□□ 1.27
NPHP3Q7Z494 AP001350.2-201ENST00000625104 1094 ntBASIC23.01■■□□□ 1.27
NPHP3Q7Z494 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP3Q7Z494 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
NPHP3Q7Z494 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23■■□□□ 1.27
NPHP3Q7Z494 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC23■■□□□ 1.27
NPHP3Q7Z494 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
NPHP3Q7Z494 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
NPHP3Q7Z494 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 PP14571-201ENST00000404327 934 ntTSL 2 BASIC23■■□□□ 1.27
NPHP3Q7Z494 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC23■■□□□ 1.27
NPHP3Q7Z494 ACA64.2-201ENST00000459014 129 ntBASIC23■■□□□ 1.27
NPHP3Q7Z494 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC23■■□□□ 1.27
NPHP3Q7Z494 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
NPHP3Q7Z494 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
NPHP3Q7Z494 AC004840.1-201ENST00000636359 365 ntBASIC23■■□□□ 1.27
NPHP3Q7Z494 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 BX323043.1-201ENST00000641006 1765 ntBASIC23■■□□□ 1.27
NPHP3Q7Z494 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP3Q7Z494 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
NPHP3Q7Z494 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC22.99■■□□□ 1.27
NPHP3Q7Z494 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
NPHP3Q7Z494 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms