Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
PRKDCP78527 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC12.22□□□□□ -0.45
PRKDCP78527 AC123567.1-201ENST00000548294 1261 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
PRKDCP78527 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
PRKDCP78527 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC12.22□□□□□ -0.45
PRKDCP78527 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC12.22□□□□□ -0.45
PRKDCP78527 AC106872.11-201ENST00000605838 421 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC12.22□□□□□ -0.45
PRKDCP78527 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC12.22□□□□□ -0.45
PRKDCP78527 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC12.22□□□□□ -0.45
PRKDCP78527 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
PRKDCP78527 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.22□□□□□ -0.45
PRKDCP78527 CTBP2P5-201ENST00000454986 1264 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 AC002558.1-201ENST00000488906 803 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 MTRF1LP2-201ENST00000506027 1122 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
PRKDCP78527 AC093726.1-201ENST00000608064 963 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 MTND6P24-201ENST00000440466 518 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 MPRIPP1-201ENST00000452433 1089 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.22□□□□□ -0.45
PRKDCP78527 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC12.22□□□□□ -0.45
PRKDCP78527 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PRKDCP78527 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PRKDCP78527 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
PRKDCP78527 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC12.21□□□□□ -0.45
PRKDCP78527 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
PRKDCP78527 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.21□□□□□ -0.45
PRKDCP78527 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PRKDCP78527 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.21□□□□□ -0.45
PRKDCP78527 AL355334.1-201ENST00000417713 215 ntBASIC12.21□□□□□ -0.45
PRKDCP78527 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC12.21□□□□□ -0.45
PRKDCP78527 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC12.21□□□□□ -0.45
PRKDCP78527 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC12.21□□□□□ -0.45
PRKDCP78527 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.21□□□□□ -0.45
PRKDCP78527 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
PRKDCP78527 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
PRKDCP78527 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
PRKDCP78527 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
PRKDCP78527 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
PRKDCP78527 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC12.21□□□□□ -0.45
PRKDCP78527 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.21□□□□□ -0.45
PRKDCP78527 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
PRKDCP78527 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.21□□□□□ -0.45
PRKDCP78527 AL033527.5-201ENST00000641382 801 ntBASIC12.21□□□□□ -0.45
PRKDCP78527 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC12.21□□□□□ -0.46
PRKDCP78527 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PRKDCP78527 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC12.21□□□□□ -0.46
PRKDCP78527 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
PRKDCP78527 AMT-250ENST00000637682 1823 ntTSL 5 BASIC12.21□□□□□ -0.46
PRKDCP78527 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
PRKDCP78527 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC12.21□□□□□ -0.46
PRKDCP78527 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
PRKDCP78527 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
PRKDCP78527 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC12.21□□□□□ -0.46
PRKDCP78527 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC12.21□□□□□ -0.46
PRKDCP78527 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC12.21□□□□□ -0.46
PRKDCP78527 WFDC1-204ENST00000613603 549 ntBASIC12.21□□□□□ -0.46
PRKDCP78527 AC009542.2-202ENST00000619004 1067 ntBASIC12.21□□□□□ -0.46
PRKDCP78527 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
PRKDCP78527 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12.2□□□□□ -0.46
PRKDCP78527 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC12.2□□□□□ -0.46
PRKDCP78527 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 MIR5572-201ENST00000583188 137 ntBASIC12.2□□□□□ -0.46
PRKDCP78527 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC12.2□□□□□ -0.46
PRKDCP78527 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.2□□□□□ -0.46
PRKDCP78527 EFTUD1P1-204ENST00000560401 1798 ntBASIC12.2□□□□□ -0.46
PRKDCP78527 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
PRKDCP78527 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms