Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 SPCS2P4-201ENST00000436160 681 ntBASIC20.16■□□□□ 0.82
RHBDL3P58872 AL592309.1-201ENST00000443127 649 ntBASIC20.16■□□□□ 0.82
RHBDL3P58872 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RHBDL3P58872 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC20.16■□□□□ 0.82
RHBDL3P58872 AC004449.1-201ENST00000564240 433 ntBASIC20.16■□□□□ 0.82
RHBDL3P58872 U1.21-201ENST00000580816 167 ntBASIC20.16■□□□□ 0.82
RHBDL3P58872 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.16■□□□□ 0.82
RHBDL3P58872 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.16■□□□□ 0.82
RHBDL3P58872 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.16■□□□□ 0.82
RHBDL3P58872 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.16■□□□□ 0.82
RHBDL3P58872 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.16■□□□□ 0.82
RHBDL3P58872 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC20.15■□□□□ 0.82
RHBDL3P58872 GPS2P2-201ENST00000430745 888 ntBASIC20.15■□□□□ 0.82
RHBDL3P58872 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RHBDL3P58872 RN7SL589P-201ENST00000481268 310 ntBASIC20.15■□□□□ 0.82
RHBDL3P58872 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.15■□□□□ 0.82
RHBDL3P58872 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC20.15■□□□□ 0.82
RHBDL3P58872 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.15■□□□□ 0.82
RHBDL3P58872 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.15■□□□□ 0.82
RHBDL3P58872 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.15■□□□□ 0.82
RHBDL3P58872 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC20.15■□□□□ 0.82
RHBDL3P58872 MPDU1-223ENST00000582151 728 ntBASIC20.15■□□□□ 0.82
RHBDL3P58872 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.15■□□□□ 0.82
RHBDL3P58872 AL161645.1-201ENST00000622716 1255 ntBASIC20.15■□□□□ 0.82
RHBDL3P58872 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.15■□□□□ 0.82
RHBDL3P58872 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.15■□□□□ 0.82
RHBDL3P58872 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.15■□□□□ 0.82
RHBDL3P58872 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.15■□□□□ 0.82
RHBDL3P58872 CROCCP2-202ENST00000412962 2773 ntBASIC20.15■□□□□ 0.82
RHBDL3P58872 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RHBDL3P58872 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.14■□□□□ 0.82
RHBDL3P58872 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.14■□□□□ 0.81
RHBDL3P58872 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.14■□□□□ 0.81
RHBDL3P58872 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.14■□□□□ 0.81
RHBDL3P58872 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
RHBDL3P58872 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
RHBDL3P58872 LINC02084-201ENST00000606069 1096 ntBASIC20.14■□□□□ 0.81
RHBDL3P58872 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
RHBDL3P58872 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RHBDL3P58872 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
RHBDL3P58872 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
RHBDL3P58872 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 AC018470.1-201ENST00000624790 3129 ntBASIC20.13■□□□□ 0.81
RHBDL3P58872 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
RHBDL3P58872 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 AC005237.2-201ENST00000434368 219 ntBASIC20.13■□□□□ 0.81
RHBDL3P58872 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC20.13■□□□□ 0.81
RHBDL3P58872 SLBP-205ENST00000488267 987 ntTSL 2 BASIC20.13■□□□□ 0.81
RHBDL3P58872 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.13■□□□□ 0.81
RHBDL3P58872 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RHBDL3P58872 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.13■□□□□ 0.81
RHBDL3P58872 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
RHBDL3P58872 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RHBDL3P58872 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
RHBDL3P58872 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 KRT8P49-201ENST00000604166 1432 ntBASIC20.12■□□□□ 0.81
RHBDL3P58872 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC20.12■□□□□ 0.81
RHBDL3P58872 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RHBDL3P58872 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms