Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.39■□□□□ 0.05
CLRN1P58418 PRELID1P1-202ENST00000567272 903 ntBASIC15.39■□□□□ 0.05
CLRN1P58418 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
CLRN1P58418 AL121772.3-201ENST00000610840 674 ntBASIC15.39■□□□□ 0.05
CLRN1P58418 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.39■□□□□ 0.05
CLRN1P58418 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.39■□□□□ 0.05
CLRN1P58418 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLRN1P58418 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 LINC02012-201ENST00000608206 1725 ntBASIC15.39■□□□□ 0.05
CLRN1P58418 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
CLRN1P58418 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CLRN1P58418 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CLRN1P58418 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.39■□□□□ 0.05
CLRN1P58418 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN1P58418 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CLRN1P58418 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN1P58418 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN1P58418 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.38■□□□□ 0.05
CLRN1P58418 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
CLRN1P58418 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN1P58418 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.38■□□□□ 0.05
CLRN1P58418 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.38■□□□□ 0.05
CLRN1P58418 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CLRN1P58418 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.38■□□□□ 0.05
CLRN1P58418 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 AL121761.2-201ENST00000598007 1648 ntBASIC15.38■□□□□ 0.05
CLRN1P58418 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CLRN1P58418 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
CLRN1P58418 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLRN1P58418 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.37■□□□□ 0.05
CLRN1P58418 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.37■□□□□ 0.05
CLRN1P58418 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CLRN1P58418 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CLRN1P58418 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CLRN1P58418 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.37■□□□□ 0.05
CLRN1P58418 SPDYE21P-201ENST00000413323 827 ntBASIC15.37■□□□□ 0.05
CLRN1P58418 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
CLRN1P58418 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.37■□□□□ 0.05
CLRN1P58418 AC132008.2-207ENST00000454517 770 ntBASIC15.37■□□□□ 0.05
CLRN1P58418 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
CLRN1P58418 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.37■□□□□ 0.05
CLRN1P58418 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.37■□□□□ 0.05
CLRN1P58418 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms