Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AL645939.2-201ENST00000427340 991 ntBASIC17.88■□□□□ 0.45
EPHB3P54753 HMGN1P19-201ENST00000436976 333 ntBASIC17.88■□□□□ 0.45
EPHB3P54753 AC140658.5-201ENST00000438532 169 ntBASIC17.88■□□□□ 0.45
EPHB3P54753 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.88■□□□□ 0.45
EPHB3P54753 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.88■□□□□ 0.45
EPHB3P54753 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.88■□□□□ 0.45
EPHB3P54753 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
EPHB3P54753 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
EPHB3P54753 AC005412.3-201ENST00000580309 715 ntBASIC17.88■□□□□ 0.45
EPHB3P54753 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.88■□□□□ 0.45
EPHB3P54753 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.88■□□□□ 0.45
EPHB3P54753 AC027612.4-201ENST00000605371 583 ntBASIC17.88■□□□□ 0.45
EPHB3P54753 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
EPHB3P54753 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.88■□□□□ 0.45
EPHB3P54753 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
EPHB3P54753 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.88■□□□□ 0.45
EPHB3P54753 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
EPHB3P54753 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.88■□□□□ 0.45
EPHB3P54753 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
EPHB3P54753 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
EPHB3P54753 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
EPHB3P54753 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
EPHB3P54753 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
EPHB3P54753 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.88■□□□□ 0.45
EPHB3P54753 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
EPHB3P54753 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.87■□□□□ 0.45
EPHB3P54753 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.87■□□□□ 0.45
EPHB3P54753 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
EPHB3P54753 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
EPHB3P54753 AC004461.1-201ENST00000412461 403 ntBASIC17.87■□□□□ 0.45
EPHB3P54753 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.87■□□□□ 0.45
EPHB3P54753 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.87■□□□□ 0.45
EPHB3P54753 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
EPHB3P54753 FAM86C2P-203ENST00000528684 1004 ntBASIC17.87■□□□□ 0.45
EPHB3P54753 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.87■□□□□ 0.45
EPHB3P54753 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.87■□□□□ 0.45
EPHB3P54753 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.87■□□□□ 0.45
EPHB3P54753 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.87■□□□□ 0.45
EPHB3P54753 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
EPHB3P54753 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.87■□□□□ 0.45
EPHB3P54753 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
EPHB3P54753 AC008764.6-201ENST00000595909 2069 ntBASIC17.87■□□□□ 0.45
EPHB3P54753 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
EPHB3P54753 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
EPHB3P54753 AC016396.2-201ENST00000562575 1417 ntBASIC17.87■□□□□ 0.45
EPHB3P54753 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
EPHB3P54753 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
EPHB3P54753 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
EPHB3P54753 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
EPHB3P54753 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.86■□□□□ 0.45
EPHB3P54753 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
EPHB3P54753 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
EPHB3P54753 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
EPHB3P54753 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
EPHB3P54753 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
EPHB3P54753 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
EPHB3P54753 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.86■□□□□ 0.45
EPHB3P54753 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.86■□□□□ 0.45
EPHB3P54753 TSEN15P1-201ENST00000423257 515 ntBASIC17.86■□□□□ 0.45
EPHB3P54753 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.86■□□□□ 0.45
EPHB3P54753 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.86■□□□□ 0.45
EPHB3P54753 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.86■□□□□ 0.45
EPHB3P54753 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.86■□□□□ 0.45
EPHB3P54753 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.86■□□□□ 0.45
EPHB3P54753 RFPL4AP1-201ENST00000530883 850 ntBASIC17.86■□□□□ 0.45
EPHB3P54753 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.86■□□□□ 0.45
EPHB3P54753 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.86■□□□□ 0.45
EPHB3P54753 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
EPHB3P54753 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.86■□□□□ 0.45
EPHB3P54753 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
EPHB3P54753 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
EPHB3P54753 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
EPHB3P54753 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
EPHB3P54753 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
EPHB3P54753 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
EPHB3P54753 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
EPHB3P54753 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
EPHB3P54753 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
EPHB3P54753 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.85■□□□□ 0.45
EPHB3P54753 AL671277.1-201ENST00000429656 993 ntBASIC17.85■□□□□ 0.45
EPHB3P54753 EGFEM1P-202ENST00000431685 1563 ntBASIC17.85■□□□□ 0.45
EPHB3P54753 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
EPHB3P54753 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
EPHB3P54753 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms