Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
NEK3P51956 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
NEK3P51956 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
NEK3P51956 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.75■□□□□ 0.43
NEK3P51956 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.75■□□□□ 0.43
NEK3P51956 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NEK3P51956 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
NEK3P51956 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.74■□□□□ 0.43
NEK3P51956 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
NEK3P51956 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
NEK3P51956 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.74■□□□□ 0.43
NEK3P51956 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.74■□□□□ 0.43
NEK3P51956 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.74■□□□□ 0.43
NEK3P51956 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
NEK3P51956 AC093909.1-201ENST00000504731 1122 ntBASIC17.74■□□□□ 0.43
NEK3P51956 RNA5SP419-201ENST00000515908 135 ntBASIC17.74■□□□□ 0.43
NEK3P51956 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
NEK3P51956 AD001527.2-201ENST00000622994 785 ntBASIC17.74■□□□□ 0.43
NEK3P51956 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
NEK3P51956 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.74■□□□□ 0.43
NEK3P51956 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.74■□□□□ 0.43
NEK3P51956 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 PMPCAP1-201ENST00000508114 1576 ntBASIC17.74■□□□□ 0.43
NEK3P51956 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NEK3P51956 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NEK3P51956 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
NEK3P51956 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 BX276092.7-203ENST00000637198 1536 ntBASIC17.73■□□□□ 0.43
NEK3P51956 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
NEK3P51956 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
NEK3P51956 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.73■□□□□ 0.43
NEK3P51956 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
NEK3P51956 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
NEK3P51956 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.73■□□□□ 0.43
NEK3P51956 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NEK3P51956 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.73■□□□□ 0.43
NEK3P51956 AC021087.4-201ENST00000563761 564 ntBASIC17.73■□□□□ 0.43
NEK3P51956 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.73■□□□□ 0.43
NEK3P51956 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.73■□□□□ 0.43
NEK3P51956 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
NEK3P51956 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
NEK3P51956 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.73■□□□□ 0.43
NEK3P51956 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
NEK3P51956 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NEK3P51956 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
NEK3P51956 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.72■□□□□ 0.43
NEK3P51956 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
NEK3P51956 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms