Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA1P49639 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA1P49639 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
HOXA1P49639 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA1P49639 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 HLA-J-201ENST00000462773 1622 ntBASIC14.33□□□□□ -0.12
HOXA1P49639 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
HOXA1P49639 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXA1P49639 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 AC092384.3-202ENST00000564646 2873 ntBASIC14.32□□□□□ -0.12
HOXA1P49639 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXA1P49639 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
HOXA1P49639 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HOXA1P49639 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 TSPY7P-201ENST00000431358 1114 ntBASIC14.32□□□□□ -0.12
HOXA1P49639 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 AC009947.2-201ENST00000444014 672 ntBASIC14.32□□□□□ -0.12
HOXA1P49639 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 SEC1P-202ENST00000473944 940 ntBASIC14.32□□□□□ -0.12
HOXA1P49639 AC128688.1-201ENST00000487626 519 ntBASIC14.32□□□□□ -0.12
HOXA1P49639 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXA1P49639 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXA1P49639 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
HOXA1P49639 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXA1P49639 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXA1P49639 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXA1P49639 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXA1P49639 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 LINC00304-203ENST00000565008 1864 ntBASIC14.31□□□□□ -0.12
HOXA1P49639 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 GAD2-202ENST00000376248 680 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
HOXA1P49639 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
HOXA1P49639 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms