Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RFX3P48380 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.2■□□□□ 0.18
RFX3P48380 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.2■□□□□ 0.18
RFX3P48380 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
RFX3P48380 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RFX3P48380 INTS4P1-201ENST00000438455 1935 ntBASIC16.19■□□□□ 0.18
RFX3P48380 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX3P48380 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RFX3P48380 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
RFX3P48380 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 AL049757.1-201ENST00000616842 1596 ntBASIC16.19■□□□□ 0.18
RFX3P48380 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RFX3P48380 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX3P48380 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 MYCLP1-201ENST00000372451 1075 ntBASIC16.19■□□□□ 0.18
RFX3P48380 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.19■□□□□ 0.18
RFX3P48380 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 POM121L3P-201ENST00000419331 1163 ntBASIC16.19■□□□□ 0.18
RFX3P48380 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.19■□□□□ 0.18
RFX3P48380 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX3P48380 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.19■□□□□ 0.18
RFX3P48380 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.19■□□□□ 0.18
RFX3P48380 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.19■□□□□ 0.18
RFX3P48380 AL591684.3-201ENST00000605187 298 ntBASIC16.19■□□□□ 0.18
RFX3P48380 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX3P48380 AC012313.10-201ENST00000623509 926 ntBASIC16.19■□□□□ 0.18
RFX3P48380 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX3P48380 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RFX3P48380 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX3P48380 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RFX3P48380 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX3P48380 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RFX3P48380 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX3P48380 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX3P48380 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX3P48380 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RFX3P48380 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.18■□□□□ 0.18
RFX3P48380 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.18■□□□□ 0.18
RFX3P48380 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.18■□□□□ 0.18
RFX3P48380 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 AL732292.2-201ENST00000609649 430 ntBASIC16.18■□□□□ 0.18
RFX3P48380 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
RFX3P48380 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.18■□□□□ 0.18
RFX3P48380 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
RFX3P48380 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX3P48380 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX3P48380 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 AD000864.1-201ENST00000624076 2295 ntBASIC16.17■□□□□ 0.18
RFX3P48380 AC046185.3-201ENST00000623228 1824 ntBASIC16.17■□□□□ 0.18
RFX3P48380 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
RFX3P48380 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms