Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCA1P28370 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SMARCA1P28370 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SMARCA1P28370 AC091167.2-201ENST00000579581 588 ntBASIC19.64■□□□□ 0.73
SMARCA1P28370 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCA1P28370 AC010507.1-201ENST00000633895 436 ntBASIC19.64■□□□□ 0.73
SMARCA1P28370 AC007064.4-201ENST00000637740 555 ntBASIC19.64■□□□□ 0.73
SMARCA1P28370 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SMARCA1P28370 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.64■□□□□ 0.73
SMARCA1P28370 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCA1P28370 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.64■□□□□ 0.73
SMARCA1P28370 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCA1P28370 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMARCA1P28370 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
SMARCA1P28370 AL353732.1-201ENST00000569618 1459 ntBASIC19.63■□□□□ 0.73
SMARCA1P28370 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.63■□□□□ 0.73
SMARCA1P28370 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SMARCA1P28370 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.63■□□□□ 0.73
SMARCA1P28370 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 POLD2P1-201ENST00000511220 997 ntBASIC19.63■□□□□ 0.73
SMARCA1P28370 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SMARCA1P28370 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.63■□□□□ 0.73
SMARCA1P28370 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.63■□□□□ 0.73
SMARCA1P28370 AC040169.1-201ENST00000565382 521 ntBASIC19.63■□□□□ 0.73
SMARCA1P28370 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.63■□□□□ 0.73
SMARCA1P28370 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.63■□□□□ 0.73
SMARCA1P28370 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.63■□□□□ 0.73
SMARCA1P28370 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SMARCA1P28370 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCA1P28370 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
SMARCA1P28370 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
SMARCA1P28370 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SMARCA1P28370 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.62■□□□□ 0.73
SMARCA1P28370 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.62■□□□□ 0.73
SMARCA1P28370 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCA1P28370 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.62■□□□□ 0.73
SMARCA1P28370 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
SMARCA1P28370 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.62■□□□□ 0.73
SMARCA1P28370 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.62■□□□□ 0.73
SMARCA1P28370 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SMARCA1P28370 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.62■□□□□ 0.73
SMARCA1P28370 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.62■□□□□ 0.73
SMARCA1P28370 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCA1P28370 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCA1P28370 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.61■□□□□ 0.73
SMARCA1P28370 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCA1P28370 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.61■□□□□ 0.73
SMARCA1P28370 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.61■□□□□ 0.73
SMARCA1P28370 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCA1P28370 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.61■□□□□ 0.73
SMARCA1P28370 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SMARCA1P28370 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCA1P28370 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCA1P28370 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCA1P28370 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.61■□□□□ 0.73
SMARCA1P28370 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.61■□□□□ 0.73
SMARCA1P28370 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.61■□□□□ 0.73
SMARCA1P28370 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.61■□□□□ 0.73
SMARCA1P28370 AC023141.13-201ENST00000604991 943 ntBASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms