Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
HMGA1P17096 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
HMGA1P17096 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGA1P17096 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGA1P17096 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 AL009183.1-201ENST00000603760 355 ntBASIC17.7■□□□□ 0.42
HMGA1P17096 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGA1P17096 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGA1P17096 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGA1P17096 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGA1P17096 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGA1P17096 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
HMGA1P17096 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGA1P17096 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGA1P17096 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGA1P17096 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
HMGA1P17096 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGA1P17096 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.69■□□□□ 0.42
HMGA1P17096 HCG4-201ENST00000418983 998 ntBASIC17.69■□□□□ 0.42
HMGA1P17096 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 AL645939.2-201ENST00000427340 991 ntBASIC17.69■□□□□ 0.42
HMGA1P17096 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.69■□□□□ 0.42
HMGA1P17096 TIMM8BP1-201ENST00000452384 211 ntBASIC17.69■□□□□ 0.42
HMGA1P17096 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HMGA1P17096 FAM86C2P-203ENST00000528684 1004 ntBASIC17.69■□□□□ 0.42
HMGA1P17096 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.69■□□□□ 0.42
HMGA1P17096 AC091167.2-201ENST00000579581 588 ntBASIC17.69■□□□□ 0.42
HMGA1P17096 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGA1P17096 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGA1P17096 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGA1P17096 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGA1P17096 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGA1P17096 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HMGA1P17096 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HMGA1P17096 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGA1P17096 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 CYMP-203ENST00000474680 1263 ntBASIC17.68■□□□□ 0.42
HMGA1P17096 HLA-J-203ENST00000494367 1087 ntBASIC17.68■□□□□ 0.42
HMGA1P17096 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGA1P17096 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGA1P17096 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGA1P17096 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 AC243562.1-201ENST00000560672 389 ntBASIC17.68■□□□□ 0.42
HMGA1P17096 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGA1P17096 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGA1P17096 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HMGA1P17096 AC093028.1-201ENST00000622998 982 ntBASIC17.68■□□□□ 0.42
HMGA1P17096 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGA1P17096 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HMGA1P17096 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGA1P17096 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGA1P17096 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGA1P17096 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HMGA1P17096 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGA1P17096 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms