Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.57■□□□□ 0.4
VCANP13611 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VCANP13611 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.57■□□□□ 0.4
VCANP13611 CASP16P-204ENST00000635032 809 ntBASIC17.57■□□□□ 0.4
VCANP13611 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.57■□□□□ 0.4
VCANP13611 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.57■□□□□ 0.4
VCANP13611 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VCANP13611 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
VCANP13611 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 AC005229.1-201ENST00000392885 409 ntBASIC17.56■□□□□ 0.4
VCANP13611 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.56■□□□□ 0.4
VCANP13611 CSF2RBP1-201ENST00000447905 391 ntBASIC17.56■□□□□ 0.4
VCANP13611 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.56■□□□□ 0.4
VCANP13611 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
VCANP13611 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.56■□□□□ 0.4
VCANP13611 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 CALR4P-201ENST00000431943 946 ntBASIC17.56■□□□□ 0.4
VCANP13611 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
VCANP13611 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.56■□□□□ 0.4
VCANP13611 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.56■□□□□ 0.4
VCANP13611 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.56■□□□□ 0.4
VCANP13611 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
VCANP13611 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 AC015936.2-201ENST00000593177 259 ntBASIC17.56■□□□□ 0.4
VCANP13611 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VCANP13611 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.56■□□□□ 0.4
VCANP13611 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.56■□□□□ 0.4
VCANP13611 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCANP13611 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VCANP13611 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.56■□□□□ 0.4
VCANP13611 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.56■□□□□ 0.4
VCANP13611 MIR5572-201ENST00000583188 137 ntBASIC17.56■□□□□ 0.4
VCANP13611 AL645728.2-201ENST00000641974 660 ntBASIC17.56■□□□□ 0.4
VCANP13611 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
VCANP13611 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.55■□□□□ 0.4
VCANP13611 RPL17P11-201ENST00000417593 544 ntBASIC17.55■□□□□ 0.4
VCANP13611 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.55■□□□□ 0.4
VCANP13611 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VCANP13611 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.55■□□□□ 0.4
VCANP13611 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VCANP13611 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.55■□□□□ 0.4
VCANP13611 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.55■□□□□ 0.4
VCANP13611 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.55■□□□□ 0.4
VCANP13611 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.55■□□□□ 0.4
VCANP13611 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
VCANP13611 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.55■□□□□ 0.4
VCANP13611 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
VCANP13611 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
VCANP13611 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCANP13611 AC116562.4-201ENST00000641316 2276 ntBASIC17.55■□□□□ 0.4
VCANP13611 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.54■□□□□ 0.4
VCANP13611 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.54■□□□□ 0.4
VCANP13611 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.54■□□□□ 0.4
VCANP13611 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
VCANP13611 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VCANP13611 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.54■□□□□ 0.4
VCANP13611 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.54■□□□□ 0.4
VCANP13611 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VCANP13611 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 AC099336.1-201ENST00000417053 1171 ntBASIC17.54■□□□□ 0.4
VCANP13611 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.54■□□□□ 0.4
VCANP13611 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.54■□□□□ 0.4
VCANP13611 AC016629.1-201ENST00000596579 586 ntBASIC17.54■□□□□ 0.4
VCANP13611 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VCANP13611 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms