Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 NFIC-211ENST00000641145 8399 ntBASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 RHOQP3-201ENST00000437982 621 ntBASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 AC134043.2-201ENST00000624206 2238 ntBASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 SLC25A6P2-201ENST00000497974 877 ntBASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 CXCL1P1-201ENST00000502804 216 ntBASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 MIR3687-2-201ENST00000577708 61 ntBASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 MIR3687-1-201ENST00000614492 61 ntBASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 AL513190.1-201ENST00000621254 727 ntBASIC15.27■□□□□ 0.04
CLCF1Q9UBD9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CLCF1Q9UBD9 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLCF1Q9UBD9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.03
CLCF1Q9UBD9 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.27■□□□□ 0.03
CLCF1Q9UBD9 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.27■□□□□ 0.03
CLCF1Q9UBD9 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.27■□□□□ 0.03
CLCF1Q9UBD9 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLCF1Q9UBD9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 AC112482.1-201ENST00000492080 688 ntBASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 PDPK2P-202ENST00000562415 1191 ntBASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 AC055717.3-201ENST00000622967 595 ntBASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 AC004877.2-201ENST00000623941 599 ntBASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 AL138688.1-201ENST00000624851 1594 ntBASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms