Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 SLC25A6P4-201ENST00000586535 553 ntBASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 FAM215A-202ENST00000632077 792 ntBASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 AC092068.3-201ENST00000587894 2016 ntBASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS54Q9P1Q0 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 GPR89P-201ENST00000407924 1495 ntBASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 KRT18P27-201ENST00000427733 1299 ntBASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 MIR7706-201ENST00000613747 67 ntBASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 OR6D1P-202ENST00000641007 5290 ntBASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS54Q9P1Q0 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 PCDHA12-202ENST00000613593 2588 ntBASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 RNA5SP419-201ENST00000515908 135 ntBASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 AL773604.1-201ENST00000617417 272 ntBASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 AC008735.5-201ENST00000623544 497 ntBASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 FRMD8P1-201ENST00000440433 1524 ntBASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 AP002414.3-201ENST00000589352 1468 ntBASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS54Q9P1Q0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms