Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.25■□□□□ 0.03
MMP28Q9H239 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.25■□□□□ 0.03
MMP28Q9H239 PKD1P5-201ENST00000532415 10291 ntBASIC15.25■□□□□ 0.03
MMP28Q9H239 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
MMP28Q9H239 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.25■□□□□ 0.03
MMP28Q9H239 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
MMP28Q9H239 AC007663.1-201ENST00000438948 1240 ntBASIC15.25■□□□□ 0.03
MMP28Q9H239 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC15.25■□□□□ 0.03
MMP28Q9H239 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 AL049597.2-201ENST00000565575 961 ntBASIC15.25■□□□□ 0.03
MMP28Q9H239 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC15.25■□□□□ 0.03
MMP28Q9H239 AC092865.7-201ENST00000641832 219 ntBASIC15.25■□□□□ 0.03
MMP28Q9H239 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.25■□□□□ 0.03
MMP28Q9H239 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 AC092364.2-201ENST00000596710 2692 ntBASIC15.25■□□□□ 0.03
MMP28Q9H239 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 LINC01568-207ENST00000641790 1380 ntBASIC15.24■□□□□ 0.03
MMP28Q9H239 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
MMP28Q9H239 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
MMP28Q9H239 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 ARMC10P1-201ENST00000313754 855 ntBASIC15.24■□□□□ 0.03
MMP28Q9H239 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 AC005521.1-201ENST00000393351 872 ntBASIC15.24■□□□□ 0.03
MMP28Q9H239 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.24■□□□□ 0.03
MMP28Q9H239 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 GXYLT1P6-201ENST00000456472 1187 ntBASIC15.24■□□□□ 0.03
MMP28Q9H239 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC15.24■□□□□ 0.03
MMP28Q9H239 KRT18P35-201ENST00000510488 1269 ntBASIC15.24■□□□□ 0.03
MMP28Q9H239 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.24■□□□□ 0.03
MMP28Q9H239 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.24■□□□□ 0.03
MMP28Q9H239 MIR3180-5-201ENST00000583743 153 ntBASIC15.24■□□□□ 0.03
MMP28Q9H239 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
MMP28Q9H239 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.24■□□□□ 0.03
MMP28Q9H239 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.24■□□□□ 0.03
MMP28Q9H239 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MMP28Q9H239 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.24■□□□□ 0.03
MMP28Q9H239 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.23■□□□□ 0.03
MMP28Q9H239 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.23■□□□□ 0.03
MMP28Q9H239 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms