Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 FAM220BP-201ENST00000377689 816 ntBASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 AC008738.7-201ENST00000609744 511 ntBASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK3Q9BYB0 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 PRYP6-201ENST00000514804 343 ntBASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 AC084346.2-201ENST00000607097 949 ntBASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 TOP3BP1-201ENST00000420768 1380 ntBASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 AC116353.5-201ENST00000638148 1699 ntBASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK3Q9BYB0 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.11
SHANK3Q9BYB0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 FRMD8P1-201ENST00000440433 1524 ntBASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
SHANK3Q9BYB0 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 AC027369.6-201ENST00000525520 931 ntBASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 AL662799.1-202ENST00000614205 422 ntBASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 HNRNPA3P1-201ENST00000401429 1139 ntBASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 HNRNPA3P5-201ENST00000455201 833 ntBASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 SIGLEC29P-201ENST00000599873 1114 ntBASIC21.94■■□□□ 1.1
SHANK3Q9BYB0 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms