Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 FLJ38576-201ENST00000623820 2459 ntBASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
DEPDC4Q8N2C3 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 LYSMD4-203ENST00000378904 2122 ntBASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
DEPDC4Q8N2C3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 AC005915.1-201ENST00000624912 2018 ntBASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 AC008741.2-201ENST00000612792 3115 ntBASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
DEPDC4Q8N2C3 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms