Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
RNFT1Q5M7Z0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 NOC2LP1-202ENST00000452600 2235 ntBASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 AL139400.1-201ENST00000366220 510 ntBASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 AC004461.1-201ENST00000412461 403 ntBASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 AP000344.2-201ENST00000512987 629 ntBASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 RFPL4AP1-201ENST00000530883 850 ntBASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 AC244517.3-201ENST00000616254 1235 ntBASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 REXO1L3P-201ENST00000622202 1288 ntBASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNFT1Q5M7Z0 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 AC026471.1-201ENST00000564629 3026 ntBASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 CYMP-203ENST00000474680 1263 ntBASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 AC120057.1-201ENST00000483947 663 ntBASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNFT1Q5M7Z0 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 ADH5P3-201ENST00000433842 1137 ntBASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 AC022145.2-201ENST00000598203 171 ntBASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 AC093028.1-201ENST00000622998 982 ntBASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.41■□□□□ 0.06
RNFT1Q5M7Z0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms