Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA3P55318 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
FOXA3P55318 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC12.98□□□□□ -0.33
FOXA3P55318 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC12.98□□□□□ -0.33
FOXA3P55318 AC026366.1-201ENST00000488803 879 ntBASIC12.98□□□□□ -0.33
FOXA3P55318 AC124947.2-201ENST00000547118 1133 ntBASIC12.98□□□□□ -0.33
FOXA3P55318 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 AL139327.4-201ENST00000612362 153 ntBASIC12.98□□□□□ -0.33
FOXA3P55318 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
FOXA3P55318 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
FOXA3P55318 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC12.98□□□□□ -0.33
FOXA3P55318 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FOXA3P55318 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA3P55318 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
FOXA3P55318 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA3P55318 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
FOXA3P55318 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC12.97□□□□□ -0.33
FOXA3P55318 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
FOXA3P55318 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC12.97□□□□□ -0.33
FOXA3P55318 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA3P55318 AC113404.2-201ENST00000507884 177 ntBASIC12.97□□□□□ -0.33
FOXA3P55318 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC12.97□□□□□ -0.33
FOXA3P55318 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 AC010240.3-201ENST00000607688 395 ntBASIC12.97□□□□□ -0.33
FOXA3P55318 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 CR769767.2-201ENST00000622735 460 ntBASIC12.97□□□□□ -0.33
FOXA3P55318 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
FOXA3P55318 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA3P55318 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC12.97□□□□□ -0.33
FOXA3P55318 AC092053.1-201ENST00000605787 1936 ntBASIC12.97□□□□□ -0.33
FOXA3P55318 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA3P55318 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA3P55318 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms