Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CDH6P55285 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.92■□□□□ 0.46
CDH6P55285 AP005117.1-201ENST00000584346 1413 ntBASIC17.92■□□□□ 0.46
CDH6P55285 SIGLEC16-201ENST00000599858 1437 ntBASIC17.92■□□□□ 0.46
CDH6P55285 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 AC079776.2-201ENST00000641154 1609 ntBASIC17.92■□□□□ 0.46
CDH6P55285 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.92■□□□□ 0.46
CDH6P55285 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CDH6P55285 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.92■□□□□ 0.46
CDH6P55285 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.92■□□□□ 0.46
CDH6P55285 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.92■□□□□ 0.46
CDH6P55285 PRELID1P1-202ENST00000567272 903 ntBASIC17.92■□□□□ 0.46
CDH6P55285 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.92■□□□□ 0.46
CDH6P55285 AL732292.2-201ENST00000609649 430 ntBASIC17.92■□□□□ 0.46
CDH6P55285 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH6P55285 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
CDH6P55285 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CDH6P55285 AC106886.4-201ENST00000623557 2502 ntBASIC17.91■□□□□ 0.46
CDH6P55285 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.91■□□□□ 0.46
CDH6P55285 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.91■□□□□ 0.46
CDH6P55285 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.91■□□□□ 0.46
CDH6P55285 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
CDH6P55285 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.91■□□□□ 0.46
CDH6P55285 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.91■□□□□ 0.46
CDH6P55285 AL121772.3-201ENST00000610840 674 ntBASIC17.91■□□□□ 0.46
CDH6P55285 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 AC005915.1-201ENST00000624912 2018 ntBASIC17.91■□□□□ 0.46
CDH6P55285 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH6P55285 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.91■□□□□ 0.46
CDH6P55285 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CDH6P55285 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CDH6P55285 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 AC097637.2-201ENST00000624096 1997 ntBASIC17.9■□□□□ 0.46
CDH6P55285 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CDH6P55285 AC092068.3-201ENST00000587894 2016 ntBASIC17.9■□□□□ 0.46
CDH6P55285 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.9■□□□□ 0.46
CDH6P55285 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.9■□□□□ 0.46
CDH6P55285 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.9■□□□□ 0.46
CDH6P55285 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.9■□□□□ 0.46
CDH6P55285 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.9■□□□□ 0.46
CDH6P55285 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.9■□□□□ 0.46
CDH6P55285 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 AC073592.4-201ENST00000623827 446 ntBASIC17.9■□□□□ 0.46
CDH6P55285 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CDH6P55285 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.9■□□□□ 0.46
CDH6P55285 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 AC004817.3-201ENST00000602957 2129 ntBASIC17.9■□□□□ 0.46
CDH6P55285 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CDH6P55285 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.9■□□□□ 0.46
CDH6P55285 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH6P55285 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
CDH6P55285 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CDH6P55285 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CDH6P55285 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CDH6P55285 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CDH6P55285 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CDH6P55285 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.89■□□□□ 0.46
CDH6P55285 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CDH6P55285 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CDH6P55285 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CDH6P55285 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDH6P55285 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms