Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
HNF4AP41235 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.72■□□□□ 0.27
HNF4AP41235 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.72■□□□□ 0.27
HNF4AP41235 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HNF4AP41235 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HNF4AP41235 TSPY19P-201ENST00000418461 509 ntBASIC16.72■□□□□ 0.27
HNF4AP41235 TSPY18P-201ENST00000441642 509 ntBASIC16.72■□□□□ 0.27
HNF4AP41235 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.72■□□□□ 0.27
HNF4AP41235 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.72■□□□□ 0.27
HNF4AP41235 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.72■□□□□ 0.27
HNF4AP41235 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.72■□□□□ 0.27
HNF4AP41235 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.72■□□□□ 0.27
HNF4AP41235 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HNF4AP41235 AP000867.4-201ENST00000641616 219 ntBASIC16.72■□□□□ 0.27
HNF4AP41235 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HNF4AP41235 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.72■□□□□ 0.27
HNF4AP41235 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
HNF4AP41235 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HNF4AP41235 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.72■□□□□ 0.27
HNF4AP41235 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
HNF4AP41235 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
HNF4AP41235 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.71■□□□□ 0.27
HNF4AP41235 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.71■□□□□ 0.27
HNF4AP41235 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.71■□□□□ 0.27
HNF4AP41235 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.71■□□□□ 0.27
HNF4AP41235 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.71■□□□□ 0.27
HNF4AP41235 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.71■□□□□ 0.27
HNF4AP41235 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
HNF4AP41235 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
HNF4AP41235 DUSP5P1-201ENST00000441325 1139 ntBASIC16.71■□□□□ 0.27
HNF4AP41235 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.71■□□□□ 0.27
HNF4AP41235 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.71■□□□□ 0.27
HNF4AP41235 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.71■□□□□ 0.27
HNF4AP41235 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.71■□□□□ 0.27
HNF4AP41235 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.71■□□□□ 0.27
HNF4AP41235 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.71■□□□□ 0.27
HNF4AP41235 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HNF4AP41235 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HNF4AP41235 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.71■□□□□ 0.27
HNF4AP41235 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HNF4AP41235 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HNF4AP41235 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HNF4AP41235 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.71■□□□□ 0.27
HNF4AP41235 AD000864.1-201ENST00000624076 2295 ntBASIC16.71■□□□□ 0.27
HNF4AP41235 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.71■□□□□ 0.26
HNF4AP41235 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
HNF4AP41235 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HNF4AP41235 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HNF4AP41235 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.71■□□□□ 0.26
HNF4AP41235 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
HNF4AP41235 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HNF4AP41235 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
HNF4AP41235 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HNF4AP41235 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HNF4AP41235 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.7■□□□□ 0.26
HNF4AP41235 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.7■□□□□ 0.26
HNF4AP41235 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.7■□□□□ 0.26
HNF4AP41235 AL020989.1-201ENST00000422979 469 ntBASIC16.7■□□□□ 0.26
HNF4AP41235 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.7■□□□□ 0.26
HNF4AP41235 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.7■□□□□ 0.26
HNF4AP41235 SIGLEC30P-201ENST00000455569 941 ntBASIC16.7■□□□□ 0.26
HNF4AP41235 LINC01711-201ENST00000598340 967 ntBASIC16.7■□□□□ 0.26
HNF4AP41235 AL139384.1-201ENST00000612143 3047 ntBASIC16.7■□□□□ 0.26
HNF4AP41235 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms