Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL033527.5-201ENST00000641382 801 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A3P12111 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL6A3P12111 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A3P12111 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.68■□□□□ 0.42
COL6A3P12111 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
COL6A3P12111 BOLA2P3-201ENST00000404566 256 ntBASIC17.68■□□□□ 0.42
COL6A3P12111 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A3P12111 AC007969.1-201ENST00000433675 447 ntBASIC17.68■□□□□ 0.42
COL6A3P12111 AC055876.2-201ENST00000531834 546 ntBASIC17.68■□□□□ 0.42
COL6A3P12111 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.68■□□□□ 0.42
COL6A3P12111 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A3P12111 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 AL161938.1-201ENST00000569833 2180 ntBASIC17.68■□□□□ 0.42
COL6A3P12111 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
COL6A3P12111 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A3P12111 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL6A3P12111 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL6A3P12111 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 KRT18P34-201ENST00000488218 1270 ntBASIC17.68■□□□□ 0.42
COL6A3P12111 WFDC1-204ENST00000613603 549 ntBASIC17.68■□□□□ 0.42
COL6A3P12111 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A3P12111 AC012569.1-201ENST00000591191 1524 ntBASIC17.68■□□□□ 0.42
COL6A3P12111 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.68■□□□□ 0.42
COL6A3P12111 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.67■□□□□ 0.42
COL6A3P12111 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.67■□□□□ 0.42
COL6A3P12111 AC091046.1-201ENST00000331871 207 ntBASIC17.67■□□□□ 0.42
COL6A3P12111 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A3P12111 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A3P12111 AC104306.2-201ENST00000451877 341 ntBASIC17.67■□□□□ 0.42
COL6A3P12111 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.67■□□□□ 0.42
COL6A3P12111 AC009542.2-202ENST00000619004 1067 ntBASIC17.67■□□□□ 0.42
COL6A3P12111 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A3P12111 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A3P12111 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.67■□□□□ 0.42
COL6A3P12111 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.67■□□□□ 0.42
COL6A3P12111 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 AC126763.1-201ENST00000552015 2118 ntBASIC17.67■□□□□ 0.42
COL6A3P12111 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A3P12111 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A3P12111 KLF2P4-201ENST00000451959 1225 ntBASIC17.67■□□□□ 0.42
COL6A3P12111 EIF4HP1-201ENST00000453115 687 ntBASIC17.67■□□□□ 0.42
COL6A3P12111 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.67■□□□□ 0.42
COL6A3P12111 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.67■□□□□ 0.42
COL6A3P12111 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.67■□□□□ 0.42
COL6A3P12111 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL6A3P12111 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A3P12111 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A3P12111 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL6A3P12111 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A3P12111 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A3P12111 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.66■□□□□ 0.42
COL6A3P12111 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.66■□□□□ 0.42
COL6A3P12111 AC114501.2-201ENST00000439631 535 ntBASIC17.66■□□□□ 0.42
COL6A3P12111 AC114501.1-201ENST00000445949 172 ntBASIC17.66■□□□□ 0.42
COL6A3P12111 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.66■□□□□ 0.42
COL6A3P12111 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.66■□□□□ 0.42
COL6A3P12111 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A3P12111 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A3P12111 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A3P12111 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.66■□□□□ 0.42
COL6A3P12111 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.66■□□□□ 0.42
COL6A3P12111 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A3P12111 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A3P12111 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
COL6A3P12111 GMCL1P1-201ENST00000463439 1581 ntBASIC17.66■□□□□ 0.42
COL6A3P12111 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms