Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 KRT18P29-201ENST00000397031 1267 ntBASIC13□□□□□ -0.33
HLA-DQA1P01909 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC13□□□□□ -0.33
HLA-DQA1P01909 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 TSPY20P-201ENST00000450910 630 ntBASIC13□□□□□ -0.33
HLA-DQA1P01909 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 ADM-205ENST00000528544 586 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 C1QBPP2-201ENST00000528754 825 ntBASIC13□□□□□ -0.33
HLA-DQA1P01909 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC13□□□□□ -0.33
HLA-DQA1P01909 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 FAM197Y4-202ENST00000622692 608 ntBASIC13□□□□□ -0.33
HLA-DQA1P01909 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13□□□□□ -0.33
HLA-DQA1P01909 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC13□□□□□ -0.33
HLA-DQA1P01909 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
HLA-DQA1P01909 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13□□□□□ -0.33
HLA-DQA1P01909 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HLA-DQA1P01909 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DQA1P01909 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HLA-DQA1P01909 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DQA1P01909 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 AC007326.2-201ENST00000624224 7579 ntBASIC12.99□□□□□ -0.33
HLA-DQA1P01909 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 AL023284.2-201ENST00000405850 579 ntBASIC12.99□□□□□ -0.33
HLA-DQA1P01909 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 AC128676.1-201ENST00000454392 318 ntBASIC12.99□□□□□ -0.33
HLA-DQA1P01909 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 MTDHP1-201ENST00000605323 784 ntBASIC12.99□□□□□ -0.33
HLA-DQA1P01909 Six3os1_6.1-201ENST00000620790 196 ntBASIC12.99□□□□□ -0.33
HLA-DQA1P01909 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 NID2-208ENST00000617139 3827 ntTSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DQA1P01909 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms