Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.79■□□□□ 0.28
HDAC3O15379 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC3O15379 AC111152.3-201ENST00000569699 673 ntBASIC16.79■□□□□ 0.28
HDAC3O15379 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.79■□□□□ 0.28
HDAC3O15379 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
HDAC3O15379 AC145285.6-201ENST00000604632 637 ntBASIC16.79■□□□□ 0.28
HDAC3O15379 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HDAC3O15379 AL049757.1-201ENST00000616842 1596 ntBASIC16.79■□□□□ 0.28
HDAC3O15379 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.79■□□□□ 0.28
HDAC3O15379 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 FRMD8P1-201ENST00000440433 1524 ntBASIC16.79■□□□□ 0.28
HDAC3O15379 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC3O15379 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HDAC3O15379 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC3O15379 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
HDAC3O15379 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC3O15379 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HDAC3O15379 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC3O15379 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC3O15379 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC3O15379 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC3O15379 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HDAC3O15379 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.78■□□□□ 0.28
HDAC3O15379 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
HDAC3O15379 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.78■□□□□ 0.28
HDAC3O15379 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.78■□□□□ 0.28
HDAC3O15379 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC3O15379 AC011558.1-201ENST00000623459 338 ntBASIC16.78■□□□□ 0.28
HDAC3O15379 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC3O15379 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
HDAC3O15379 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC3O15379 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.78■□□□□ 0.28
HDAC3O15379 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HDAC3O15379 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HDAC3O15379 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC3O15379 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC3O15379 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.77■□□□□ 0.28
HDAC3O15379 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.77■□□□□ 0.28
HDAC3O15379 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.77■□□□□ 0.28
HDAC3O15379 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.77■□□□□ 0.28
HDAC3O15379 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 LIN28AP1-201ENST00000429574 405 ntBASIC16.77■□□□□ 0.28
HDAC3O15379 AL359075.1-203ENST00000462729 1002 ntBASIC16.77■□□□□ 0.28
HDAC3O15379 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.77■□□□□ 0.28
HDAC3O15379 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.77■□□□□ 0.28
HDAC3O15379 STK25P1-201ENST00000585406 838 ntBASIC16.77■□□□□ 0.28
HDAC3O15379 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
HDAC3O15379 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.77■□□□□ 0.28
HDAC3O15379 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC3O15379 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HDAC3O15379 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
HDAC3O15379 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.77■□□□□ 0.27
HDAC3O15379 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.77■□□□□ 0.27
HDAC3O15379 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
HDAC3O15379 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.77■□□□□ 0.27
HDAC3O15379 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
HDAC3O15379 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC3O15379 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
HDAC3O15379 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms