Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 AC010980.1-201ENST00000587192 1142 ntBASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.61■■□□□ 1.05
CLCF1Q9UBD9 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLCF1Q9UBD9 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.6■■□□□ 1.05
CLCF1Q9UBD9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLCF1Q9UBD9 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLCF1Q9UBD9 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCF1Q9UBD9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCF1Q9UBD9 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLCF1Q9UBD9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLCF1Q9UBD9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.58■■□□□ 1.05
CLCF1Q9UBD9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.05
CLCF1Q9UBD9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.58■■□□□ 1.05
CLCF1Q9UBD9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.58■■□□□ 1.05
CLCF1Q9UBD9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLCF1Q9UBD9 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLCF1Q9UBD9 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLCF1Q9UBD9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.58■■□□□ 1.04
CLCF1Q9UBD9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLCF1Q9UBD9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.57■■□□□ 1.04
CLCF1Q9UBD9 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCF1Q9UBD9 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CLCF1Q9UBD9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCF1Q9UBD9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCF1Q9UBD9 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLCF1Q9UBD9 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.56■■□□□ 1.04
CLCF1Q9UBD9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCF1Q9UBD9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.56■■□□□ 1.04
CLCF1Q9UBD9 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCF1Q9UBD9 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCF1Q9UBD9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCF1Q9UBD9 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLCF1Q9UBD9 AC087393.1-201ENST00000582896 145 ntBASIC21.55■■□□□ 1.04
CLCF1Q9UBD9 PVT1_1.1-201ENST00000615125 194 ntBASIC21.55■■□□□ 1.04
CLCF1Q9UBD9 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLCF1Q9UBD9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLCF1Q9UBD9 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLCF1Q9UBD9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCF1Q9UBD9 RPS2P7-201ENST00000447334 885 ntBASIC21.53■■□□□ 1.04
CLCF1Q9UBD9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.53■■□□□ 1.04
CLCF1Q9UBD9 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCF1Q9UBD9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCF1Q9UBD9 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.53■■□□□ 1.04
CLCF1Q9UBD9 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLCF1Q9UBD9 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLCF1Q9UBD9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLCF1Q9UBD9 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.52■■□□□ 1.04
CLCF1Q9UBD9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.04
CLCF1Q9UBD9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLCF1Q9UBD9 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CLCF1Q9UBD9 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLCF1Q9UBD9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CLCF1Q9UBD9 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLCF1Q9UBD9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLCF1Q9UBD9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.51■■□□□ 1.03
CLCF1Q9UBD9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLCF1Q9UBD9 KRT18P10-201ENST00000388836 1287 ntBASIC21.51■■□□□ 1.03
CLCF1Q9UBD9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLCF1Q9UBD9 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCF1Q9UBD9 KRT8P33-201ENST00000508125 1423 ntBASIC21.5■■□□□ 1.03
CLCF1Q9UBD9 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.5■■□□□ 1.03
CLCF1Q9UBD9 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 AC103834.1-201ENST00000520383 144 ntBASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 AC019171.1-201ENST00000601251 1056 ntBASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CLCF1Q9UBD9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCF1Q9UBD9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLCF1Q9UBD9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCF1Q9UBD9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCF1Q9UBD9 MIR4508-201ENST00000584178 70 ntBASIC21.48■■□□□ 1.03
CLCF1Q9UBD9 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCF1Q9UBD9 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCF1Q9UBD9 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.48■■□□□ 1.03
CLCF1Q9UBD9 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLCF1Q9UBD9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms