Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SEC61A2Q9H9S3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SEC61A2Q9H9S3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 RARRES2P2-201ENST00000394842 485 ntBASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 RNF126P1-201ENST00000567452 1320 ntBASIC21.55■■□□□ 1.04
SEC61A2Q9H9S3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SEC61A2Q9H9S3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SEC61A2Q9H9S3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SEC61A2Q9H9S3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SEC61A2Q9H9S3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SEC61A2Q9H9S3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SEC61A2Q9H9S3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEC61A2Q9H9S3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEC61A2Q9H9S3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEC61A2Q9H9S3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SEC61A2Q9H9S3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SEC61A2Q9H9S3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEC61A2Q9H9S3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEC61A2Q9H9S3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SEC61A2Q9H9S3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SEC61A2Q9H9S3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.52■■□□□ 1.04
SEC61A2Q9H9S3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.52■■□□□ 1.04
SEC61A2Q9H9S3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SEC61A2Q9H9S3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SEC61A2Q9H9S3 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.52■■□□□ 1.03
SEC61A2Q9H9S3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SEC61A2Q9H9S3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SEC61A2Q9H9S3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
SEC61A2Q9H9S3 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SEC61A2Q9H9S3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SEC61A2Q9H9S3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SEC61A2Q9H9S3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SEC61A2Q9H9S3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SEC61A2Q9H9S3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
SEC61A2Q9H9S3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SEC61A2Q9H9S3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SEC61A2Q9H9S3 DUSP8P4-201ENST00000399538 1761 ntBASIC21.5■■□□□ 1.03
SEC61A2Q9H9S3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.5■■□□□ 1.03
SEC61A2Q9H9S3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SEC61A2Q9H9S3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SEC61A2Q9H9S3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SEC61A2Q9H9S3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.49■■□□□ 1.03
SEC61A2Q9H9S3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SEC61A2Q9H9S3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.48■■□□□ 1.03
SEC61A2Q9H9S3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.48■■□□□ 1.03
SEC61A2Q9H9S3 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SEC61A2Q9H9S3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SEC61A2Q9H9S3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SEC61A2Q9H9S3 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SEC61A2Q9H9S3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SEC61A2Q9H9S3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.47■■□□□ 1.03
SEC61A2Q9H9S3 ERN1-208ENST00000606895 2068 ntBASIC21.47■■□□□ 1.03
SEC61A2Q9H9S3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SEC61A2Q9H9S3 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SEC61A2Q9H9S3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEC61A2Q9H9S3 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SEC61A2Q9H9S3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.45■■□□□ 1.02
SEC61A2Q9H9S3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SEC61A2Q9H9S3 ECEL1P2-201ENST00000461596 1295 ntBASIC21.45■■□□□ 1.02
SEC61A2Q9H9S3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SEC61A2Q9H9S3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
SEC61A2Q9H9S3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SEC61A2Q9H9S3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.44■■□□□ 1.02
SEC61A2Q9H9S3 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
SEC61A2Q9H9S3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
SEC61A2Q9H9S3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.44■■□□□ 1.02
SEC61A2Q9H9S3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SEC61A2Q9H9S3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SEC61A2Q9H9S3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SEC61A2Q9H9S3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SEC61A2Q9H9S3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SEC61A2Q9H9S3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SEC61A2Q9H9S3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SEC61A2Q9H9S3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SEC61A2Q9H9S3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SEC61A2Q9H9S3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SEC61A2Q9H9S3 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SEC61A2Q9H9S3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
SEC61A2Q9H9S3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.42■■□□□ 1.02
SEC61A2Q9H9S3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.42■■□□□ 1.02
SEC61A2Q9H9S3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SEC61A2Q9H9S3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SEC61A2Q9H9S3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SEC61A2Q9H9S3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms