Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
SHANK3Q9BYB0 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SHANK3Q9BYB0 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHANK3Q9BYB0 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SHANK3Q9BYB0 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SHANK3Q9BYB0 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC32.01■■■□□ 2.72
SHANK3Q9BYB0 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.72
SHANK3Q9BYB0 LONRF2P2-201ENST00000439212 571 ntBASIC32.01■■■□□ 2.72
SHANK3Q9BYB0 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC32.01■■■□□ 2.72
SHANK3Q9BYB0 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.72
SHANK3Q9BYB0 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
SHANK3Q9BYB0 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
SHANK3Q9BYB0 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC32■■■□□ 2.71
SHANK3Q9BYB0 UNC93B8-201ENST00000511903 705 ntBASIC32■■■□□ 2.71
SHANK3Q9BYB0 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
SHANK3Q9BYB0 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC32■■■□□ 2.71
SHANK3Q9BYB0 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SHANK3Q9BYB0 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC32■■■□□ 2.71
SHANK3Q9BYB0 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHANK3Q9BYB0 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHANK3Q9BYB0 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SHANK3Q9BYB0 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHANK3Q9BYB0 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SHANK3Q9BYB0 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC31.99■■■□□ 2.71
SHANK3Q9BYB0 AL449106.1-201ENST00000608517 1980 ntBASIC31.99■■■□□ 2.71
SHANK3Q9BYB0 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHANK3Q9BYB0 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.98■■■□□ 2.71
SHANK3Q9BYB0 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHANK3Q9BYB0 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC31.98■■■□□ 2.71
SHANK3Q9BYB0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC31.97■■■□□ 2.71
SHANK3Q9BYB0 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHANK3Q9BYB0 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHANK3Q9BYB0 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC31.96■■■□□ 2.71
SHANK3Q9BYB0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SHANK3Q9BYB0 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SHANK3Q9BYB0 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SHANK3Q9BYB0 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC31.96■■■□□ 2.71
SHANK3Q9BYB0 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC31.95■■■□□ 2.71
SHANK3Q9BYB0 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC31.95■■■□□ 2.71
SHANK3Q9BYB0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC31.95■■■□□ 2.71
SHANK3Q9BYB0 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
SHANK3Q9BYB0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC31.95■■■□□ 2.7
SHANK3Q9BYB0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC31.95■■■□□ 2.7
SHANK3Q9BYB0 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
SHANK3Q9BYB0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
SHANK3Q9BYB0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
SHANK3Q9BYB0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHANK3Q9BYB0 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHANK3Q9BYB0 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SHANK3Q9BYB0 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SHANK3Q9BYB0 KRT16P3-201ENST00000439127 1283 ntBASIC31.92■■■□□ 2.7
SHANK3Q9BYB0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC31.92■■■□□ 2.7
SHANK3Q9BYB0 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SHANK3Q9BYB0 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
SHANK3Q9BYB0 DRD5P2-201ENST00000421395 2012 ntBASIC31.92■■■□□ 2.7
SHANK3Q9BYB0 BX664725.1-201ENST00000438252 379 ntBASIC31.92■■■□□ 2.7
SHANK3Q9BYB0 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SHANK3Q9BYB0 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.9■■■□□ 2.7
SHANK3Q9BYB0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SHANK3Q9BYB0 MIR4787-201ENST00000607364 84 ntBASIC31.9■■■□□ 2.7
SHANK3Q9BYB0 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SHANK3Q9BYB0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
SHANK3Q9BYB0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.89■■■□□ 2.7
SHANK3Q9BYB0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
SHANK3Q9BYB0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 AC022616.5-201ENST00000518796 181 ntBASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SHANK3Q9BYB0 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHANK3Q9BYB0 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC31.87■■■□□ 2.69
SHANK3Q9BYB0 AC131281.2-201ENST00000520478 145 ntBASIC31.87■■■□□ 2.69
SHANK3Q9BYB0 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHANK3Q9BYB0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC31.87■■■□□ 2.69
SHANK3Q9BYB0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC31.86■■■□□ 2.69
SHANK3Q9BYB0 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SHANK3Q9BYB0 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SHANK3Q9BYB0 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHANK3Q9BYB0 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHANK3Q9BYB0 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
SHANK3Q9BYB0 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SHANK3Q9BYB0 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
SHANK3Q9BYB0 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SHANK3Q9BYB0 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC31.8■■■□□ 2.68
SHANK3Q9BYB0 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC31.8■■■□□ 2.68
SHANK3Q9BYB0 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SHANK3Q9BYB0 MIR4281-201ENST00000580852 62 ntBASIC31.8■■■□□ 2.68
SHANK3Q9BYB0 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 189.2 ms