Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC24.19■■□□□ 1.46
CPNE1Q99829 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC24.19■■□□□ 1.46
CPNE1Q99829 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.18■■□□□ 1.46
CPNE1Q99829 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.18■■□□□ 1.46
CPNE1Q99829 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CPNE1Q99829 AC142381.3-201ENST00000568208 1670 ntBASIC24.18■■□□□ 1.46
CPNE1Q99829 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
CPNE1Q99829 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CPNE1Q99829 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC24.17■■□□□ 1.46
CPNE1Q99829 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC24.16■■□□□ 1.46
CPNE1Q99829 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CPNE1Q99829 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CPNE1Q99829 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CPNE1Q99829 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.16■■□□□ 1.46
CPNE1Q99829 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC24.16■■□□□ 1.46
CPNE1Q99829 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CPNE1Q99829 AC126177.7-201ENST00000547904 679 ntBASIC24.16■■□□□ 1.46
CPNE1Q99829 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CPNE1Q99829 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC24.15■■□□□ 1.46
CPNE1Q99829 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.15■■□□□ 1.46
CPNE1Q99829 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC24.15■■□□□ 1.46
CPNE1Q99829 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CPNE1Q99829 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CPNE1Q99829 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC24.14■■□□□ 1.46
CPNE1Q99829 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CPNE1Q99829 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
CPNE1Q99829 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.14■■□□□ 1.45
CPNE1Q99829 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CPNE1Q99829 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CPNE1Q99829 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
CPNE1Q99829 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CPNE1Q99829 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
CPNE1Q99829 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
CPNE1Q99829 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CPNE1Q99829 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CPNE1Q99829 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.13■■□□□ 1.45
CPNE1Q99829 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.12■■□□□ 1.45
CPNE1Q99829 AC093323.1-202ENST00000635031 2045 ntBASIC24.12■■□□□ 1.45
CPNE1Q99829 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE1Q99829 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE1Q99829 ABHD17AP4-201ENST00000411545 909 ntBASIC24.12■■□□□ 1.45
CPNE1Q99829 MIR3648-2-201ENST00000581792 180 ntBASIC24.12■■□□□ 1.45
CPNE1Q99829 MIR3648-1-201ENST00000615959 180 ntBASIC24.12■■□□□ 1.45
CPNE1Q99829 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE1Q99829 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.12■■□□□ 1.45
CPNE1Q99829 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE1Q99829 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE1Q99829 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.11■■□□□ 1.45
CPNE1Q99829 AC022211.4-201ENST00000625094 2161 ntBASIC24.11■■□□□ 1.45
CPNE1Q99829 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CPNE1Q99829 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.11■■□□□ 1.45
CPNE1Q99829 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.11■■□□□ 1.45
CPNE1Q99829 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CPNE1Q99829 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.11■■□□□ 1.45
CPNE1Q99829 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CPNE1Q99829 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.1■■□□□ 1.45
CPNE1Q99829 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
CPNE1Q99829 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
CPNE1Q99829 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE1Q99829 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE1Q99829 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE1Q99829 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE1Q99829 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE1Q99829 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE1Q99829 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CPNE1Q99829 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CPNE1Q99829 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC24.09■■□□□ 1.45
CPNE1Q99829 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CPNE1Q99829 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
CPNE1Q99829 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.44
CPNE1Q99829 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CPNE1Q99829 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
CPNE1Q99829 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CPNE1Q99829 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CPNE1Q99829 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CPNE1Q99829 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
CPNE1Q99829 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CPNE1Q99829 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CPNE1Q99829 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.06■■□□□ 1.44
CPNE1Q99829 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CPNE1Q99829 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CPNE1Q99829 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CPNE1Q99829 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CPNE1Q99829 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.05■■□□□ 1.44
CPNE1Q99829 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.05■■□□□ 1.44
CPNE1Q99829 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC24.05■■□□□ 1.44
CPNE1Q99829 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
CPNE1Q99829 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CPNE1Q99829 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.04■■□□□ 1.44
CPNE1Q99829 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
CPNE1Q99829 AC138932.3-201ENST00000567634 1902 ntBASIC24.04■■□□□ 1.44
CPNE1Q99829 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CPNE1Q99829 METRNL-202ENST00000570778 967 ntTSL 5 BASIC24.04■■□□□ 1.44
CPNE1Q99829 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CPNE1Q99829 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CPNE1Q99829 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CPNE1Q99829 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CPNE1Q99829 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.02■■□□□ 1.44
CPNE1Q99829 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CPNE1Q99829 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms