Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.28■■□□□ 1.16
DEPDC4Q8N2C3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
DEPDC4Q8N2C3 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
DEPDC4Q8N2C3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DEPDC4Q8N2C3 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DEPDC4Q8N2C3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.27■■□□□ 1.16
DEPDC4Q8N2C3 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
DEPDC4Q8N2C3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
DEPDC4Q8N2C3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.27■■□□□ 1.16
DEPDC4Q8N2C3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
DEPDC4Q8N2C3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DEPDC4Q8N2C3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DEPDC4Q8N2C3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DEPDC4Q8N2C3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
DEPDC4Q8N2C3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
DEPDC4Q8N2C3 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DEPDC4Q8N2C3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
DEPDC4Q8N2C3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC22.25■■□□□ 1.15
DEPDC4Q8N2C3 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DEPDC4Q8N2C3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.24■■□□□ 1.15
DEPDC4Q8N2C3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.24■■□□□ 1.15
DEPDC4Q8N2C3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DEPDC4Q8N2C3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DEPDC4Q8N2C3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
DEPDC4Q8N2C3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DEPDC4Q8N2C3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
DEPDC4Q8N2C3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DEPDC4Q8N2C3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.23■■□□□ 1.15
DEPDC4Q8N2C3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DEPDC4Q8N2C3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
DEPDC4Q8N2C3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
DEPDC4Q8N2C3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DEPDC4Q8N2C3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
DEPDC4Q8N2C3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
DEPDC4Q8N2C3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.21■■□□□ 1.15
DEPDC4Q8N2C3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC22.21■■□□□ 1.15
DEPDC4Q8N2C3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.21■■□□□ 1.15
DEPDC4Q8N2C3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.21■■□□□ 1.15
DEPDC4Q8N2C3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
DEPDC4Q8N2C3 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
DEPDC4Q8N2C3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.2■■□□□ 1.14
DEPDC4Q8N2C3 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
DEPDC4Q8N2C3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.2■■□□□ 1.14
DEPDC4Q8N2C3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.2■■□□□ 1.14
DEPDC4Q8N2C3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DEPDC4Q8N2C3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DEPDC4Q8N2C3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.18■■□□□ 1.14
DEPDC4Q8N2C3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DEPDC4Q8N2C3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DEPDC4Q8N2C3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DEPDC4Q8N2C3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DEPDC4Q8N2C3 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DEPDC4Q8N2C3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
DEPDC4Q8N2C3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DEPDC4Q8N2C3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DEPDC4Q8N2C3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DEPDC4Q8N2C3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DEPDC4Q8N2C3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 AC008813.1-201ENST00000536597 885 ntBASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 AC022211.4-201ENST00000625094 2161 ntBASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.16■■□□□ 1.14
DEPDC4Q8N2C3 AL139125.2-201ENST00000623134 1869 ntBASIC22.15■■□□□ 1.14
DEPDC4Q8N2C3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.15■■□□□ 1.14
DEPDC4Q8N2C3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.15■■□□□ 1.14
DEPDC4Q8N2C3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
DEPDC4Q8N2C3 AC110285.7-201ENST00000624417 1536 ntBASIC22.15■■□□□ 1.14
DEPDC4Q8N2C3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DEPDC4Q8N2C3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
DEPDC4Q8N2C3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.14■■□□□ 1.14
DEPDC4Q8N2C3 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
DEPDC4Q8N2C3 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
DEPDC4Q8N2C3 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.14■■□□□ 1.14
DEPDC4Q8N2C3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.14■■□□□ 1.13
DEPDC4Q8N2C3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC22.14■■□□□ 1.13
DEPDC4Q8N2C3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
DEPDC4Q8N2C3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
DEPDC4Q8N2C3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
DEPDC4Q8N2C3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms