Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
NCBP3Q53F19 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
NCBP3Q53F19 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
NCBP3Q53F19 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
NCBP3Q53F19 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC31.77■■■□□ 2.68
NCBP3Q53F19 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
NCBP3Q53F19 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
NCBP3Q53F19 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
NCBP3Q53F19 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
NCBP3Q53F19 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
NCBP3Q53F19 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.75■■■□□ 2.67
NCBP3Q53F19 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC31.75■■■□□ 2.67
NCBP3Q53F19 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC31.75■■■□□ 2.67
NCBP3Q53F19 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
NCBP3Q53F19 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.74■■■□□ 2.67
NCBP3Q53F19 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.74■■■□□ 2.67
NCBP3Q53F19 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
NCBP3Q53F19 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
NCBP3Q53F19 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
NCBP3Q53F19 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC31.72■■■□□ 2.67
NCBP3Q53F19 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC31.72■■■□□ 2.67
NCBP3Q53F19 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
NCBP3Q53F19 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NCBP3Q53F19 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.72■■■□□ 2.67
NCBP3Q53F19 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC31.71■■■□□ 2.67
NCBP3Q53F19 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
NCBP3Q53F19 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
NCBP3Q53F19 AC009831.1-201ENST00000580420 1582 ntBASIC31.7■■■□□ 2.67
NCBP3Q53F19 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
NCBP3Q53F19 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.66
NCBP3Q53F19 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NCBP3Q53F19 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
NCBP3Q53F19 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC31.69■■■□□ 2.66
NCBP3Q53F19 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC31.69■■■□□ 2.66
NCBP3Q53F19 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
NCBP3Q53F19 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.69■■■□□ 2.66
NCBP3Q53F19 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.69■■■□□ 2.66
NCBP3Q53F19 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NCBP3Q53F19 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC31.69■■■□□ 2.66
NCBP3Q53F19 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.68■■■□□ 2.66
NCBP3Q53F19 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NCBP3Q53F19 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NCBP3Q53F19 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NCBP3Q53F19 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
NCBP3Q53F19 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
NCBP3Q53F19 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.67■■■□□ 2.66
NCBP3Q53F19 ERN1-208ENST00000606895 2068 ntBASIC31.67■■■□□ 2.66
NCBP3Q53F19 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
NCBP3Q53F19 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
NCBP3Q53F19 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
NCBP3Q53F19 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC31.66■■■□□ 2.66
NCBP3Q53F19 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
NCBP3Q53F19 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
NCBP3Q53F19 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
NCBP3Q53F19 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC31.66■■■□□ 2.66
NCBP3Q53F19 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NCBP3Q53F19 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC31.65■■■□□ 2.66
NCBP3Q53F19 AC096887.2-201ENST00000623443 1957 ntBASIC31.65■■■□□ 2.66
NCBP3Q53F19 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
NCBP3Q53F19 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC31.64■■■□□ 2.66
NCBP3Q53F19 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.64■■■□□ 2.66
NCBP3Q53F19 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.63■■■□□ 2.65
NCBP3Q53F19 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
NCBP3Q53F19 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
NCBP3Q53F19 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
NCBP3Q53F19 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.62■■■□□ 2.65
NCBP3Q53F19 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.62■■■□□ 2.65
NCBP3Q53F19 AC133552.2-201ENST00000619106 1032 ntBASIC31.62■■■□□ 2.65
NCBP3Q53F19 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.62■■■□□ 2.65
NCBP3Q53F19 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
NCBP3Q53F19 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
NCBP3Q53F19 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
NCBP3Q53F19 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
NCBP3Q53F19 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
NCBP3Q53F19 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
NCBP3Q53F19 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
NCBP3Q53F19 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NCBP3Q53F19 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.59■■■□□ 2.65
NCBP3Q53F19 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NCBP3Q53F19 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.59■■■□□ 2.65
NCBP3Q53F19 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
NCBP3Q53F19 KRT18P10-201ENST00000388836 1287 ntBASIC31.58■■■□□ 2.65
NCBP3Q53F19 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
NCBP3Q53F19 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.65
NCBP3Q53F19 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NCBP3Q53F19 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
NCBP3Q53F19 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NCBP3Q53F19 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
NCBP3Q53F19 ABHD17AP5-201ENST00000580133 923 ntBASIC31.57■■■□□ 2.64
NCBP3Q53F19 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
NCBP3Q53F19 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NCBP3Q53F19 SHF-207ENST00000560540 2062 ntTSL 5 BASIC31.56■■■□□ 2.64
NCBP3Q53F19 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
NCBP3Q53F19 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC31.56■■■□□ 2.64
NCBP3Q53F19 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
NCBP3Q53F19 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
NCBP3Q53F19 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
NCBP3Q53F19 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.55■■■□□ 2.64
NCBP3Q53F19 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
NCBP3Q53F19 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms