Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RAF1P04049 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.75■■□□□ 1.07
RAF1P04049 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RAF1P04049 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RAF1P04049 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.74■■□□□ 1.07
RAF1P04049 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.74■■□□□ 1.07
RAF1P04049 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RAF1P04049 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
RAF1P04049 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
RAF1P04049 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RAF1P04049 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RAF1P04049 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RAF1P04049 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RAF1P04049 DUSP8P4-201ENST00000399538 1761 ntBASIC21.72■■□□□ 1.07
RAF1P04049 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RAF1P04049 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RAF1P04049 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RAF1P04049 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RAF1P04049 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.72■■□□□ 1.07
RAF1P04049 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RAF1P04049 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RAF1P04049 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.71■■□□□ 1.07
RAF1P04049 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RAF1P04049 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RAF1P04049 AC020928.2-201ENST00000588717 2197 ntBASIC21.71■■□□□ 1.07
RAF1P04049 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RAF1P04049 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
RAF1P04049 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.71■■□□□ 1.07
RAF1P04049 AC093323.1-202ENST00000635031 2045 ntBASIC21.71■■□□□ 1.07
RAF1P04049 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RAF1P04049 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
RAF1P04049 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RAF1P04049 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RAF1P04049 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.7■■□□□ 1.06
RAF1P04049 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
RAF1P04049 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RAF1P04049 AC092803.2-201ENST00000564287 1899 ntBASIC21.69■■□□□ 1.06
RAF1P04049 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RAF1P04049 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RAF1P04049 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RAF1P04049 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
RAF1P04049 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RAF1P04049 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RAF1P04049 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RAF1P04049 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RAF1P04049 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
RAF1P04049 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.68■■□□□ 1.06
RAF1P04049 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.68■■□□□ 1.06
RAF1P04049 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RAF1P04049 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RAF1P04049 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RAF1P04049 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RAF1P04049 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RAF1P04049 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.67■■□□□ 1.06
RAF1P04049 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAF1P04049 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAF1P04049 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.66■■□□□ 1.06
RAF1P04049 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.66■■□□□ 1.06
RAF1P04049 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAF1P04049 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAF1P04049 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAF1P04049 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAF1P04049 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RAF1P04049 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAF1P04049 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.65■■□□□ 1.06
RAF1P04049 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAF1P04049 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAF1P04049 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RAF1P04049 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.65■■□□□ 1.06
RAF1P04049 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.65■■□□□ 1.06
RAF1P04049 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAF1P04049 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAF1P04049 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
RAF1P04049 AP004609.3-201ENST00000610705 1884 ntBASIC21.64■■□□□ 1.06
RAF1P04049 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.64■■□□□ 1.06
RAF1P04049 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RAF1P04049 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RAF1P04049 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RAF1P04049 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.63■■□□□ 1.05
RAF1P04049 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RAF1P04049 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RAF1P04049 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
RAF1P04049 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.62■■□□□ 1.05
RAF1P04049 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RAF1P04049 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RAF1P04049 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RAF1P04049 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
RAF1P04049 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.61■■□□□ 1.05
RAF1P04049 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.61■■□□□ 1.05
RAF1P04049 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.61■■□□□ 1.05
RAF1P04049 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.61■■□□□ 1.05
RAF1P04049 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.61■■□□□ 1.05
RAF1P04049 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
RAF1P04049 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.61■■□□□ 1.05
RAF1P04049 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.6■■□□□ 1.05
RAF1P04049 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RAF1P04049 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
RAF1P04049 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
RAF1P04049 AC129492.7-201ENST00000622992 756 ntBASIC21.6■■□□□ 1.05
RAF1P04049 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms