Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TP73-AS1-210ENST00000637775 1455 ntBASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 AC016734.2-201ENST00000624325 1377 ntBASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 NTF6B-201ENST00000591913 560 ntBASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 HLA-A-202ENST00000376806 1854 ntBASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMA1Q9UHB6 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 PMPCAP1-201ENST00000508114 1576 ntBASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 VENTXP7-201ENST00000475503 772 ntBASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 DUX4L17-201ENST00000557360 1267 ntBASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 AL121672.3-201ENST00000608644 468 ntBASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMA1Q9UHB6 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 INTS4P1-201ENST00000438455 1935 ntBASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 AC026691.1-201ENST00000602502 2017 ntBASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 AL031133.1-201ENST00000406807 723 ntBASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 BX276092.5-203ENST00000456199 560 ntBASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LIMA1Q9UHB6 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 CYP2T1P-202ENST00000641596 2535 ntBASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms